These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 804 fasta sequence [GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATGACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAA-TCACTGAGNTACTTGTAAAATATAGNTT] [+] EMBL CD079672 [GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATGACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAA TCACTGAGNTACTTGTAAAATATAGN ] [-] EMBL CD073932 [ GAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGCACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAATAAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACACTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTTTATGACAAATATTACTTCAATTCACGTCTTCATGCAGCCCCTAATCACTAACAATACCTTTATACTAATACCTCTCAATTGTACAACTTTTAGCATTTATTGAAAAATTCACTGAGTTACTTGTAAAAaaaaagtt] consensusID : consensus_5616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 521 fasta sequence [AGCGATCCAAGGGTAAAAAGTATAACGTGGAAGTAACAATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTATGGATTTGTATTTTAACTGTTTTATTTATGCTCTACTTTAGGT] [+] EMBL CD084251 [AGCGATCCAAGGGTAAAAAGTATAACGTGGAAGTAACAATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAGAATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGACTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGGGTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTAGGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTTATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCGTCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTATTACTATCATCTTAACTCAGAAATGTATGGATTTGTATTTTAACTGTTTTATTTATGCTCTACTTTAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5616#0 GGCCANAATTTGGCACGAGGAACTAACAATACAAGCAAGACGATATCTTCGATAATCATG 60 consensus_5616#1 ------------------------AGCGATCCAAG-GGTAAAAAGTATAACGTGGAAGTA 35 * * ** **** * * * * * * consensus_5616#0 ACCTTTATTCAGTATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAG 120 consensus_5616#1 AC---AATACAATATGTCGATATGAAGCAAAAAATGGTGTACGGCTTTATGAAAATTGAG 92 ** ** ** ************************************************ consensus_5616#0 AATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGA 180 consensus_5616#1 AATTTGACTCAAGAATATCCAAGCCTAACTACATATTTTGAAGGAGAAATAATAAGTAGA 152 ************************************************************ consensus_5616#0 CTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGG 240 consensus_5616#1 CTTCACCCGTTCATGACCGGTAAATGGGATGCAACTATGGAAACAGATGTTTTGCACTGG 212 ************************************************************ consensus_5616#0 G---------------------------------AAAAAATACCAGCAACAAGTTCTCTA 267 consensus_5616#1 GTATTTGTTCAATTATTATCAGTTCACTTGCAGGAAAAAATACCAGCAACAAGTTCTCTA 272 * ************************** consensus_5616#0 GGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTT 327 consensus_5616#1 GGGAACTTCCATATAGATAGTTTCGACTACTCTATTTTAGAGACATCCGACACGATATTT 332 ************************************************************ consensus_5616#0 ATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCG 387 consensus_5616#1 ATGAGGTGGAAAGAAAAGTTCATTGTTCCGGATCCCGGTTTGAAACATATAGAAGGAGCG 392 ************************************************************ consensus_5616#0 TCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTAT 447 consensus_5616#1 TCATTCGCTGGATTTTATTATATCGGACTACAGAAATCTATTGGACATGTTCTAGGTTAT 452 ************************************************************ consensus_5616#0 TACTATCATCTTAACTCAGAAATGTTTCAATCTCTCGAACTAAAATATAAACCAGAAAGC 507 consensus_5616#1 TACTATCATCTTAACTCAGAAATGTATGGATTTGT---------ATTTTAACTGTTTTAT 503 ************************* * ** * * ** * *** consensus_5616#0 ACACCGTCTATTTTTCAGTTGCGTTAAGAATGTTCATTATTACGTGTTAGCTTGTGAAAT 567 consensus_5616#1 TTATGCTCTACTTT--AGGT---------------------------------------- 521 * **** *** ** * consensus_5616#0 AAATTTGTTTCGACAGATTTATCACTCGATTTTTATTTATTTGTTAGACAGGATGTAACA 627 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 CTTCATTTCCACAATATCTACAAATGTATTTAAATGGCATTNTATGACAAATATTACTTC 687 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 AATTCACGTCTTCATGCAGCCCCTAATCACTAAACATACCTTTATACTAATACCTCTCAA 747 consensus_5616#1 ------------------------------------------------------------ consensus_5616#0 TTGTACAACTTTTAGCATTTATTGAAAAATCACTGAGNTACTTGTAAAATATAGNTT 804 consensus_5616#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||