These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence [TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGGGTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTAAATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATGTAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAACTCAAGCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGATACTGGTCGCACCAGGTGGTCATATAGTGCAAGATGATTATATTGTGTCTAATCCAACTACCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA] [+] EMBL CD162123 [TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGGGTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTAAATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATGTAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAACTCAAGCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGATACTGGTCGCACCAGGTGGTCATATAGTGCAAGATGATTATATTGTGTCTAATCCAACTACCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA] consensusID : consensus_5623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 380 fasta sequence [ACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTT-ACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATTC] [+] EMBL CD154576 [ACGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTT ACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATT ] [-] EMBL CD154646 [ CGCGACATGGTTGTTCGTGGTAGTTTGGCTGTCGCCCATTTTTTGGATGAGCTACCGACTACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGTAAGTATAAATTATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAGTTGTTTCCTAAATGCTAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGACCACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGTTCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGACAGTCTTTTTCATTTGCTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5623#0 TTTTCCGTTTCTCCTGAACATCGTTTTCCAAATTCACAAAATGTGTCATTCACCGCACGG 60 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 GTAGAGGTGCAAAATGGTTCTGATCAACCCACTACAGCATATCTTACCACTTCACGATTA 120 consensus_5623#1 ------------------------------------------------------------ consensus_5623#0 AATCAAGCTTACTTTCTACGAAGTCGTAATCTTCTTCGTTGCCGGGACCAAAGTAGACGA 180 consensus_5623#1 -----------------------------------------------------------A 1 * consensus_5623#0 CGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACT 240 consensus_5623#1 CGCGACATGGTTGTTCGTGGTAGTTTGGCTATCGCCCATTTTTTGGATGAGCTACCGACT 61 ************************************************************ consensus_5623#0 ACGGAACATCAACTAGAGTCTTTATCTGTTGACGTCGCCTTTCATTCCGGAACTCAAATG 300 consensus_5623#1 ACGGAACATCAACTAGAGTCTTTATCTGTT-ACGTCGCCTTTCATTCCGTAAGTATAAAT 120 ****************************** ****************** ** * ** consensus_5623#0 TAGTTTACAATGGGTGGTGTTTTTTACGAGGTTTCTTCGATGGGTTCAAGTTCCACCAAC 360 consensus_5623#1 TATTTCTATTTCGTTTTAGTAACTATTGAGAATAGTGAGATAG--TTGTTTCCTAAATGC 178 ** ** * * * ** * *** * * *** * * * * * * consensus_5623#0 TCAA-GCTCACAGGAAAACTCCGTTCGCAAAGTCCTTCGGTGTTTTACTAGAACTATGAT 419 consensus_5623#1 TAAATAATCACAATTGTGCTCAATAATACAAAAAATCAGATCAATTGATAAATGTGCGAC 238 * ** ***** *** * ** * * * ** ** * * ** consensus_5623#0 ACTGGTCGCACCAGGTGGTCATATAGT-GCAAGATGATTAT--ATTGTGTCTAATCCAAC 476 consensus_5623#1 CACTTTCCCTTTCATTAATAAAGTACTTATATCTTGATTATTTATTTTCTTTAAGCCTGT 298 ** * * * * ** * * ******* *** * * *** ** consensus_5623#0 TA--CCTCATTGTGTAAGAAATACATTACTGAAATGGGCACAA----------------- 517 consensus_5623#1 TCACCCTCGTCAAGTAACATACACCGCCCACCAGCATTCTCCATCGAACTCTATCCTGGA 358 * **** * **** * * ** * * * * * consensus_5623#0 ---------------------- consensus_5623#1 CAGTCTTTTTCATTTGCTATTC 380 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||