These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [GATGTTCGGTATAATTTATTA-GCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTAC-TGTTACTA-CTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTTTGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTATGAGAACCACAACTATC] [+] EMBL CD154302 [GATGTTCGGTATAATTTATTA GCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTAC TGTTACTA CTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTTTGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTATGAGAACCACAACTATC] [+] EMBL CD154303 [GATGTTCGGTATAATTTATTATGCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGCATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAGTTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTACATGTTACTATCTGCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGAGGAGTATAAATCAAGCCCATCTGAACATTTTATCACTGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAGATATGTCTAATTGTACTATCAGGACTAATACCAACAGTA ] consensusID : consensus_5649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TAATATACTTGTTACTACTGCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGATATAATTTCTCAGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACATCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATATATATGTCCTGACTTTTAAAAAAAAAAAAAA] [-] EMBL AI395511 [TAATATACTTGTTACTACTGCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAATCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTTTATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATATAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAACAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGATATAATTTCTCAGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACATCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATATATATGTCCTGACTTTTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5649#0 GATGTTCGGTATAATTTATTAGCTGTTGTACCAGATCGTCGTGTAGCGCTTACAAAACGC 60 consensus_5649#1 ------------------------------------------------------------ consensus_5649#0 ATGCAAATGTTGAAACGTAATCGTCAACTTATTCAAGATATTCTGTTGCGTATGTGTCAG 120 consensus_5649#1 ------------------------------------------------------------ consensus_5649#0 TTTGATCATACGTCCAAATCACTACATTGTTCTAATAGTAATAATATTACTGTTACTACT 180 consensus_5649#1 -----------------------------------------TAATATACTTGTTACTACT 19 ****** ********** consensus_5649#0 GCTACTACTACTATTACTACTACAACTGTTTCTATCAATCATGAACATCCACGTAATCAA 240 consensus_5649#1 GCTACTACTACTATTATTACAACAACTGTTTTATCCAATCATGAACATCCACGTAATCAA 79 **************** *** ********** ************************* consensus_5649#0 TCTAATTGTCATCGTCACCTTATTCAAG-AGGAGTATAAATCAAGTCCATCTGAACATTT 299 consensus_5649#1 TCTAATTGTCATCGTCACCTTATTCAAGGAGGAATATAAATCAAGTCCATCTGAACATTT 139 **************************** **** ************************** consensus_5649#0 TATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATA 359 consensus_5649#1 TATCAATGATGACAACTGTGTACATCTGCCAAACTCATCTTTATCTGTGGGGAAACAATA 199 ************************************************************ consensus_5649#0 TAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAA 419 consensus_5649#1 TAACCCTCCATGCATAGAGAAATGTTCACCTACAAGCACAAATATGTCTAATTGTACTAA 259 ************************************************************ consensus_5649#0 CAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAACATGAACCATCTGATGACTT 479 consensus_5649#1 CAGTACTAATACCAACAGTAACAATCTTGATAAAAACAAGTAGGA----TATAATTTCTC 315 *************************************** * ** * * ** ** consensus_5649#0 TGAGAACTCACGTTCCATCANAACTCGTTCAGCGACACGTGCTGCCAAACAAACAATTTA 539 consensus_5649#1 AGAGTGGTGCTTCTGTGGCTTGTTTGATTCAAGATTGCGGATGTGTGTATTCGAATTACA 375 *** * * * * **** ** * * * * consensus_5649#0 TGAGAACCACAACTATC------------------------------------------- 556 consensus_5649#1 TCGGACTCAGTACTTCTTTTGAACATCTGAATCTGTAATTTAGTAATCCCTAATAAATAT 435 * ** ** *** consensus_5649#0 ------------------------------ consensus_5649#1 ATATGTCCTGACTTTTAAAAAAAAAAAAAA 465 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||