cluster # 5656

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Schistosoma mansoni
cluster # 5656 cluster # 5656 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5656#0 length = 352 sequences # 2

consensus_5656#1 length = 137 sequences # 1

consensusID : consensus_5656#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 352
fasta sequence

                              [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAAGTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTTGGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATTAAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA]

[+] EMBL AI021753             [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAAGTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTTGGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATTAAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA]
[+] EMBL AI021752             [TTAATATACCATGTCTATATTAACACGGATTAAGCGTCCAAACACTGATTGTCCTAGTCAAATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATTTAAATATATCGGTAGCCAAACTTCAATTTCCTCATTAATTGGCAAAt                                                                                                                                                                                         ]




>consensus_5656#0
TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGTCA
AATCTGTGAAGCACAAAATCTTATAAAACGTCCTAAATCTGACTTACAATCAATTCAATT
TAAATATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAAGTATG
CACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTTGGCGA
AAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATTAAAGT
AAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA

consensusID : consensus_5656#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 137
fasta sequence

                              [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTCACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATCAATTCAAATCATATCGG]

[+] EMBL AI014235             [TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTCACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATCAATTCAAATCATATCGG]




>consensus_5656#1
TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTC
ACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATC
AATTCAAATCATATCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5656#0      TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGATTGTCCTAGT-C 59
consensus_5656#1      TTTATATACCATGTCTATATTTTTGCGGATTAAGCGTCCAAACACTGACTTCACCAGNTC 60
                      ************************************************ *   * **  *

consensus_5656#0      AAATCTGTGA-AGCACAAA-ATCTTATAAAA-CGTCCTAAATCTGACTTACAATCAATTC 116
consensus_5656#1      ACATCAGCGGTAGCACAAATATCTCAAAAAAACGTCCCTAATCTGGCTTACAACCAAATC 120
                      * *** * *  ******** **** * **** *****  ****** ******* *** **

consensus_5656#0      AATTTAAAT-ATATCGGTAGCCAAACTTCAAATTCCTCATTAATTGGCAAAATCGACAAA 175
consensus_5656#1      AATTCAAATCATATCGG------------------------------------------- 137
                      **** **** *******                                           

consensus_5656#0      GTATGCACTTCTGAAAAATTATGTAAGATTATATGCAATACCTCAGATGCTACTGTCGTT 235
consensus_5656#1      ------------------------------------------------------------
                                                                                  

consensus_5656#0      GGCGAAAATCAGACAGTCAAGTGCCAACTCTTCTTCCTGATTTCTTCCCCCGCTTTCATT 295
consensus_5656#1      ------------------------------------------------------------
                                                                                  

consensus_5656#0      AAAGTAAACAATTTAAAACGTCCTGCTATTACCACTGGAGTTTTTGATGATTTTAAA 352
consensus_5656#1      ---------------------------------------------------------