These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5700#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGACCA-ATCTACCAATACGATGT-AATAA-TTTCCCAATC-AGTTTACCA-TTTTTGTTGTTGGAAAATCCAATTTATATTAA] [+] EMBL AI395051 [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGACCA ATCTACCAATACGATGT AATAA TTTCCCAATC AGTTTACCA TTTTTGTTGTTGGAAAATCCAATTTATATTAA] [+] EMBL AI395019 [TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAAGGAAATATAAGAATGTATCATTTATACATACAGATATATATGACAAAGCAATAAAATCCGCTCATTAAAATCTATTCAAATCTTCAGCAGTTAATTCAGGAATTTCTATTTCAAAATGTGATTCCAATTCTTTGATCAAATACATTTCATCATTTAGAATAAAATTAACTGCTACACCTTCTTTACCAAAACGAACAGATCTACCAATACGATGTAAATAAGTTTCACAATCAACTTTACCAGTTTTTGTTGTTGGATATTCCAAT ] consensusID : consensus_5700#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [AAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAAGGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAAAAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATTTCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAAAAATTA] [+] EMBL AA999587 [AAGTGTATATTTGAAACTTGAATAATAAACTTAATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAAGGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAAAAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATTTCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAAAAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5700#0 TTTTTTTTTTTTTTTTTTTTGATATCAGAAGTGTATATTTGAAACTTGAATAATAAACTT 60 consensus_5700#1 ----------------------------AAGTGTATATTTGAAACTTGAATAATAAACTT 32 ******************************** consensus_5700#0 AATATTGGGCAACAAATAAAATGGTAATACAATTTCTGATGGTATCATTCAGAACTGGAA 120 consensus_5700#1 AATATTGGGCAACAAATAAAATGGTAAAACAATTTCTGATGGTATCATTCAAAACTGGAA 92 *************************** *********************** ******** consensus_5700#0 GGAAATATAAGAATGTATCATTT-ATACATACA-GATATAT--ATGACAAAG-CAAT--A 173 consensus_5700#1 GGAAATATAAGAATGTATCATTTTAAACATACATGATATAATAATGACAAAAACAATTAA 152 *********************** * ******* ****** ******** **** * consensus_5700#0 AAATCCGCTCATTAAAATCT---ATTCAAAT-CTTCA-GCA---GTTAATTCAGGAA--T 223 consensus_5700#1 AAATTCGCTCCTTTAAAATTCCAGTTCAAATTCTTCATNCACGTGTAATTTCAAGAAATT 212 **** ***** ** *** * ******* ***** ** ** * **** *** * consensus_5700#0 TTCTATTTCAAAATGTG-ATTCCAATTCTTTGATCAAATACATTT-CATCATTTAGAATA 281 consensus_5700#1 TCCCATTTCAAAATGAGGATTCCAATTCCTTGAACAAAAACAAGTGCAACAATTAGAAAA 272 * * *********** * ********** **** **** *** * ** ** ****** * consensus_5700#0 AAATTAACTGCTACACCTTCTTTACCAAAACGACCAATCTACCAATACGATGTAATAATT 341 consensus_5700#1 AAATTA------------------------------------------------------ 278 ****** consensus_5700#0 TCCCAATCAGTTTACCATTTTTGTTGTTGGAAAATCCAATTTATATTAA 390 consensus_5700#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||