cluster # 5702

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Schistosoma mansoni
cluster # 5702 cluster # 5702 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5702#0 length = 562 sequences # 1

consensus_5702#1 length = 380 sequences # 1
consensus_5702#2 length = 254 sequences # 1

consensusID : consensus_5702#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACTACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTGCTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAGCGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTACGTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTTTGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTTTTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGTTGTAACGTAAAAAATGTCATGGATC]

[+] EMBL CD200554             [GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACTACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTGCTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAGCGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTACGTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTTTGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTTTTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGTTGTAACGTAAAAAATGTCATGGATC]




>consensus_5702#0
GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACT
ACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTG
CTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAG
CGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTAC
GTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTT
TGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCGTGC
AAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTCTTC
AGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTTTTT
ACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGTTGT
AACGTAAAAAATGTCATGGATC

consensusID : consensus_5702#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 380
fasta sequence

                              [TAAAGAGCAAATGTGAATCTGATGAAGAAATAGCTCATCTACGTTCATCGAAAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGAATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTATTCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTTAATTTTATCATTTCAGAATAAAGTCTGTATAGTTCTTCCATTTCTCGTTGGTTTTTTTTAATGAATTATTTTTGAATAATTATGATTTTCAACCATGTATTTAAAAAAAGCATGAAAATTTAATTGTATAAGGTTTAATTTACCGTAAAATATATTAATTTTT]

[-] EMBL CD074119             [TAAAGAGCAAATGTGAATCTGATGAAGAAATAGCTCATCTACGTTCATCGAAAGTTATCAAATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGAATCTGAAGCTGTTGAACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTATTCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTTAATTTTATCATTTCAGAATAAAGTCTGTATAGTTCTTCCATTTCTCGTTGGTTTTTTTTAATGAATTATTTTTGAATAATTATGATTTTCAACCATGTATTTAAAAAAAGCATGAAAATTTAATTGTATAAGGTTTAATTTACCGTAAAATATATTAATTTTT]




>consensus_5702#1
TAAAGAGCAAATGTGAATCTGATGAAGAAATAGCTCATCTACGTTCATCGAAAGTTATCA
AATTCGTGCAAATTCGAGATCATGAAAGTAATGGTGAATCTGAAGCTGTTGAACGAATAG
CTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTATTCTCCTTCCAACAAGTCCA
CTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTTAATTTTATCATTTCAGAATAAAG
TCTGTATAGTTCTTCCATTTCTCGTTGGTTTTTTTTAATGAATTATTTTTGAATAATTAT
GATTTTCAACCATGTATTTAAAAAAAGCATGAAAATTTAATTGTATAAGGTTTAATTTAC
CGTAAAATATATTAATTTTT

consensusID : consensus_5702#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 254
fasta sequence

                              [TTTACGGTAAATTAAACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAATCAAAAATATTCAAAAATAATTCATTAAGAAAAACCAACGAGAAATTGAAGAACTATACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACCAGCAGTTGATCTCTTTGGGATGAGGATTAACTTCCTTGACAAAAAAACGTAACGTTGCTGAAAGAGGATGCTA]

[+] EMBL AI740390             [TTTACGGTAAATTAAACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAATCAAAAATATTCAAAAATAATTCATTAAGAAAAACCAACGAGAAATTGAAGAACTATACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACCAGCAGTTGATCTCTTTGGGATGAGGATTAACTTCCTTGACAAAAAAACGTAACGTTGCTGAAAGAGGATGCTA]




>consensus_5702#2
TTTACGGTAAATTAAACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTG
AAAATCAAAAATATTCAAAAATAATTCATTAAGAAAAACCAACGAGAAATTGAAGAACTA
TACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTAC
CAGCAGTTGATCTCTTTGGGATGAGGATTAACTTCCTTGACAAAAAAACGTAACGTTGCT
GAAAGAGGATGCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5702#0      GCCTCCTCGACTTCACCTGTGGACCATCCTCACAACAATATACAGAACTGATGTTGAACT 60
consensus_5702#1      ------------------------------------------------------------
consensus_5702#2      ------------------------------------------------------------
                                                                                  

consensus_5702#0      ACTAATCAGTTGATTTTAGTCTAAACTATTTGGTAAGTCTGCTACTGGAAATGCTTATTG 120
consensus_5702#1      --TAAAGAGCAAATGTGAATCTGA-TGAAGAAATAGCTCATCTAC-------GTTCATCG 50
consensus_5702#2      ------------------------------------------------------------
                                                                                  

consensus_5702#0      CTGACTTCCTAATGATTGTAGTTACGTGATCCAGAAGTAACTAATTTGTATATCTGTAAG 180
consensus_5702#1      AAAGTTATCAAATTCGTGCAAATTCGAGATC---ATGAAAGTAATG-GTGAATCTG-AAG 105
consensus_5702#2      ----------------------------------------------------TTTACGGT 8
                                                                          * *     

consensus_5702#0      CGATTAGTACAACTAATGATGACATTAGTTCAATATGTTCCAAACTATTGGCAGTATTAC 240
consensus_5702#1      CTGTTG----AACGAATAGCTCCTCTTCAGCAACGTTACGTTATTTGTCCAGAAGGTTAT 161
consensus_5702#2      AAATTAA---ACCTTATACAATTAAATTTTCATGCTTTTTTTAAATACATGGTTGAAAAT 65
                         **     * *  **             **   *      *  *            * 

consensus_5702#0      GTGCTTTCATTCCAGAGAATACACCAATATCAAAAGCATCCCTTTGAGCTACAAATCTTT 300
consensus_5702#1      ----TCTCCTTCCAACAAGTCCACTGCTGGTGAATTTTGGGTTANATTTTAAAAACTTTT 217
consensus_5702#2      CAAAAATATTCAAAAATAATTCATTAA----GAAAAACCAACGAGAAATTGAAGAACTAT 121
                            *  *   *   * * **         **               *  * *  * *

consensus_5702#0      ---TGTATAATTTTAAACTATATTTAAATGTAATTCGTTTATTTATAGTTATCAAATTCG 357
consensus_5702#1      AATTTTATCATTTCAGAATAAAGTCTG-TATAGTTCTTCCATTTCTCGTTGGTTTTTTTT 276
consensus_5702#2      ACAGACTTTATTCTGAAATGATAAAATTTAAAGTTTCTTAAATTTCAGTCTAAATTTACC 181
                             * ***    * *         *  * **  *  * **   **       *   

consensus_5702#0      TGCAAATTCGAGATCATGAAAGTAATGGTGGATCTGAAGCTGTTGAACGAATAGCTCCTC 417
consensus_5702#1      AATGAATT---ATTTTTGAA--TAATTATGATTTTCAACCATGTATTTAAAAAA------ 325
consensus_5702#2      AGC-AGTTGATCTCTTTGGG-------ATGAGGATTAACTTCCTTGACAAAAAA------ 227
                          * **        **          **    * **     *     ** *       

consensus_5702#0      TTCAGCAACGTTACGTTATTTGTCAAGAAGTTAATCCTCATCCAAAGGTAAGTATACTTT 477
consensus_5702#1      ---AGCA-TGAAAATTTAATTGTATAAGGTTTAAT--TTACCGTAAAATATATTAATTTT 379
consensus_5702#2      -------ACGTAACGTTGCTGAAAGAGGATGCTA-------------------------- 254
                               *  *  **  *     *       *                          

consensus_5702#0      TTTACTTCTGTTGTGTAGTAGTTCATTGAATTTTCAATCTTGGATTCATAAGATCTTAGT 537
consensus_5702#1      T----------------------------------------------------------- 380
consensus_5702#2      ------------------------------------------------------------
                                                                                  

consensus_5702#0      TGTAACGTAAAAAATGTCATGGATC 562
consensus_5702#1      -------------------------
consensus_5702#2      -------------------------