cluster # 5721

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5721 cluster # 5721 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5721#0 length = 785 sequences # 2

consensus_5721#1 length = 338 sequences # 1

consensusID : consensus_5721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 785
fasta sequence

                              [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC]

[+] EMBL CD128170             [TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCTTTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAAATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATCATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATACCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACTGATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCG                                                                                                                                                                                                                                                                       ]
[-] EMBL CD159576             [                                                                                                                                                                                                                                                                                                                                                                                                                   CAGGATCTCTCGGGCGTAAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGTTGAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACCAGATC]




>consensus_5721#0
TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCT
TTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAA
ATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATC
ATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATA
CCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA
TTTACAAGAAGTTTTAAAAATCCCCTTTCGAAACAATTACATATTGGTGATCTAAGTACT
GATGAGTTTGGTACTGCTGAAAAAGATCTGCCATTTACAAACTCAGGATCTCTCGGGCGT
AAAAGAACTGCACCGCGACCACCAAGACGTACTACACCAGTTAAACCGGTGAATTTCTTA
ACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTGCCCGAATCCCTATCGGGATGGC
TTTGATCATGCACCACTCCCACCCCCACCAGTTCACCTTGATTCTAGTCATCATCAAATA
CATCAAACCCGATCACAACAACATCCTCGTCCAGCACCACAGTCTAATAATGGTTCACTA
TCAAATAACTCGAATTCAACACCATTTTCAGTGCCATCAGTTATGAGTAGTTCTGCAATT
TTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCATTCCATTAGATAACAGCCTGACC
AGATC

consensusID : consensus_5721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA]

[+] EMBL CD159602             [TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA]




>consensus_5721#1
TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATATTTACAAAGAA
GTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAGATACTGGATGA
GTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGAGATCTCGTCAG
GCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCACGTTAAACCGAT
TGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTGCCCGAATCCCT
ATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5721#0      TTATGAATAGTTTGAACCCTATTTCGTTAACTTTATTTTGGACAGCCAGATAAAATGTCT 60
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      TTCATTAGACCCAAAAGTAGTCAAATTCACAGAAGCATATTTGATTAAGTTGCAGCATAA 120
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ATTCACTAGTTAACATAAATCCATAATATTTTTTACACATATTTTTATTCTTGGGTCATC 180
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ATTTCGTTTACTCTTATATCTTTTTCAGAGGATTCTAAATCTGATTTAGGTAGTGATATA 240
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      CCAGTAAATGCTATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 300
consensus_5721#1      -----------TATGAATAATAATAAAAATAATGTTAGCCACAAATCTCATAGAGGTATA 49
                                 *************************************************

consensus_5721#0      TTTACAA-GAAGTTTTAAA-AATCCC-CTTTCGAAACAATTACATAT-TGGTGATCTAAG 356
consensus_5721#1      TTTACAAAGAAGTTTTAAATAATCCCGCTTTCGAAACAATTACATATCTGGTGATCTAAG 109
                      ******* *********** ****** ******************** ************

consensus_5721#0      -TACTG-ATGAGTTT-GGTAC-TGCTGAAAAAGA---TCTGCCA-TTTAC-AAACTCAG- 406
consensus_5721#1      ATACTGGATGAGTTTAGGTACGTGCTCTAAAACAGACTCTGCCAGTTTACTAAACTCAGA 169
                       ***** ******** ***** ****  **** *   ******* ***** ******** 

consensus_5721#0      GATCTC-TCGGGC-GTAAA-AGAACTG-CACCGC-GACCA-CCAAGACGTACTACACCA- 459
consensus_5721#1      GATCTCGTCAGGCCGTAAAGAGAACTGGCACCGCAGACCAACCAAGACGTACTACACCAC 229
                      ****** ** *** ***** ******* ****** ***** ****************** 

consensus_5721#0      GTTAAACCGGT-GAATTTCTTAACTGACTTCAATTTACTAGAAGATAATAACTGTGTTTG 518
consensus_5721#1      GTTAAACCGATTGAATTTCTTAACTGACTTCAATTTACTAGAAGATGATAACTGTGTNTG 289
                      ********* * ********************************** ********** **

consensus_5721#0      CCCGAATCCCTATCGGGATGGCTTTGATCATGCACCACTCCCACCCCCACCAGTTCACCT 578
consensus_5721#1      CCCGAATCCCTATCGGGATGACTTTGATCATGCACCACTCCCACCCCCA----------- 338
                      ******************** ****************************           

consensus_5721#0      TGATTCTAGTCATCATCAAATACATCAAACCCGATCACAACAACATCCTCGTCCAGCACC 638
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      ACAGTCTAATAATGGTTCACTATCAAATAACTCGAATTCAACACCATTTTCAGTGCCATC 698
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      AGTTATGAGTAGTTCTGCAATTTTCCCATCTTCTCGTCAGTTTTCATATGTGGATCCCAT 758
consensus_5721#1      ------------------------------------------------------------
                                                                                  

consensus_5721#0      TCCATTAGATAACAGCCTGACCAGATC 785
consensus_5721#1      ---------------------------