These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 448 fasta sequence [AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCACCATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCCCACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGTGATCCTTTCGGCGCAAGCAGACGTACGT] [+] EMBL CD122944 [AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCACCATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCCCACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGTGATCCTTTCGGCGCAAGCAGACGTACGT] [-] EMBL CD199730 [ TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTGTAAA ] consensusID : consensus_5731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence [TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA] [-] EMBL CD199741 [TCTAGGATCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATATACAACTTCTCGTTGAGCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATTTTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGATTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5731#0 AAAATTCGCCTTTCTTGAGTCTGTATCATATGTTTCAACCTCGGCTCTTGAATACCCCAC 60 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CATTTAAATTCACATGTGACAAGTTTGTAGGCGCACATTATTGGTAGATCTGTATTTTCC 120 consensus_5731#1 ------------------------------------------------------------ consensus_5731#0 CACCATGTTGGGCCTACTAATGGACCTCGACCAGTTTTTACTGACTGATATATTCTAGGA 180 consensus_5731#1 -----------------------------------------------------TCTAGGA 7 ******* consensus_5731#0 TCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATAT 240 consensus_5731#1 TCACATGTTGCATCATAGTCAGAAGCACTGTGCAACTGATCATTTACAATATCAATATAT 67 ************************************************************ consensus_5731#0 ACAACTTCTCGTTGAGCCAGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATT 300 consensus_5731#1 ACAACTTCTCGTTGAGC-AGGAGCTTTGGTGGAAGGTTGTGAATATTTTCGATATCAATT 126 ***************** ****************************************** consensus_5731#0 TTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGA 360 consensus_5731#1 TTATCTTGTACGTGCATAGACTCAATCATCAGAGTAAAGTTATTTTGCATATATTTAGGA 186 ************************************************************ consensus_5731#0 TTCTGTAAAACTGTACGACAGTAAGGGTAAGCATTCCAGGCCTTTTCGTCAATTTCAAGT 420 consensus_5731#1 TTCTAAAAAAATTTATGAAGTTATTTATGTATACCTGTAAA------------------- 227 **** **** * ** ** ** * * consensus_5731#0 GATCCTTTCGGCGCAAGCAGACGTACGT 448 consensus_5731#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||