These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5736#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 507 fasta sequence [CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAAATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAACCAACTTCACGCTTTATGCC] [+] EMBL CD180393 [CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAAATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAA ] [-] EMBL CD136273 [ ATGGTCTAACGACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCGTAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAGAGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTGAAAGTAACCAACTTCACGCTTTATGCC] consensusID : consensus_5736#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [CGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTGTTATTTTGTCAAAAACGTGATTCGTTGCATATGAAGTTTTCAATGCTAGTAGTTTTTCGCAAACACTCACAGGCTGTTACAGGTTGATAAGTACTACATTAGTCAGCCAGCTACGGCATATATGCATCGGTTCAAGT] [+] EMBL CD186614 [CGTTCGCATTTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTTCTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATGATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTATATGCGTTACTGTTATTTTGTCAAAAACGTGATTCGTTGCATATGAAGTTTTCAATGCTAGTAGTTTTTCGCAAACACTCACAGGCTGTTACAGGTTGATAAGTACTACATTAGTCAGCCAGCTACGGCATATATGCATCGGTTCAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5736#0 CGATTTCCAGACTAGATGGAAGGTTGGTCCCTTCACCTTTTTTGTGTGTGGAGTCTGAAA 60 consensus_5736#1 ------------------------------------------------------------ consensus_5736#0 ATTATTTTCCGACATCTGCAGGGCTGGCATCTAGTGCATCTGGAACTGCAGCGTTCGCAT 120 consensus_5736#1 ---------------------------------------------------CGTTCGCAT 9 ********* consensus_5736#0 TTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTT 180 consensus_5736#1 TTGCATTAGGCACGATGTATGGTTTGGACGGTGACTACACTTCTCTTTCACGGCGTGGTT 69 ************************************************************ consensus_5736#0 CTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATG 240 consensus_5736#1 CTGGATCATCATGCCGGAGCTTACTAGGAGGGTTTGTACAATGGTCTAACAACCATGATG 129 ************************************************************ consensus_5736#0 ATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTA 300 consensus_5736#1 ATCACACTTCTGTCCAACAACTGTTTCCTGCATCGTATTGGCCAGAACTTAGAGTTCTTA 189 ************************************************************ consensus_5736#0 TATGCGTTACTAATGAAAACCCTAAACCTGTTGGCTCGACTGATGCAATGCTTTGCTGCG 360 consensus_5736#1 TATGCGTTACTGTTATTTTGTCAAAAAC--GTGATTCGTTGCATATGAAGTTTTC----- 242 *********** * * *** * ** *** ** * * *** consensus_5736#0 TAAAAACCAGTTATTTGTTTCGAAATGGCCGTGTACCATCTTCTAAAATACATGAAAAAG 420 consensus_5736#1 --AATGCTAGTAGTTT-TTCGCAAACACTCACAGGCTGTTAC---AGGTTGATAAGTACT 296 ** * *** *** ** *** * * * * * ** * * consensus_5736#0 AGATTATTTCAGCCTTAAAAGATCGTGACTTCTCTGCATTAGCAGAAGTGACTATGCGTG 480 consensus_5736#1 ACATTAGT-CAGCC------AGCTACGGCATATATGCATCGGTTCAAGT----------- 338 * **** * ***** * * * * ***** * **** consensus_5736#0 AAAGTAACCAACTTCACGCTTTATGCC 507 consensus_5736#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||