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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGACCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTCGACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCAAAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTTATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAACAGCCTTAGCAGGCCATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCCCGACAGATGGTCGCATCATATTCATGACTACAACTATATCGATCGACTTGAT]
[+] EMBL CD096612 [TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGACCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTCGACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCAAAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTTATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAACAGCCTTAGCAGGCCATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCCCGACAGATGGTCGCATCATATTCATGACTACAACTATATCGATCGACTTGAT]
consensusID : consensus_5755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence
[CACCTCTAGCACTAGTGGATNCCCGCGGCTGCAGGAAATTCGTGTTTAATATGGTATTGAGAGGGACGGCGGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCTCGACAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAATACGACCCCCCATCCATCACAAG]
[+] EMBL BG930428 [CACCTCTAGCACTAGTGGATNCCCGCGGCTGCAGGAAATTCGTGTTTAATATGGTATTGAGAGGGACGGCGGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCTCGACAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAATACGACCCCCCATCCATCACAAG]
consensusID : consensus_5755#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTACTGATTGATTCTTCTCATTGATACCCGTATTAACTACAATGGATAAATAATGACTAAAATAAAATATAACAACTTGCTTTTCAAAATCTTACCTACCAACAAACTCTTTGACATCGGCTACAATCGTTTCAGCTATACCATCACGCAGTATGACAGAATTTAAA]
[+] EMBL CD156568 [AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTACTGATTGATTCTTCTCATTGATACCCGTATTAACTACAATGGATAAATAATGACTAAAATAAAATATAACAACTTGCTTTTCAAAATCTTACCTACCAACAAACTCTTTGACATCGGCTACAATCGTTTCAGCTATACCATCACGCAGTATGACAGAATTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5755#0 TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGA 60
consensus_5755#1 ------------------------------------------------------------
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 CCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTC 120
consensus_5755#1 ------------------------------------------------------------
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 GACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCA 180
consensus_5755#1 ------------------------------------------------------------
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 AAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTT 240
consensus_5755#1 ------------------------------------------------------------
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 ATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAAC-AGCCTTAGCAGGC 299
consensus_5755#1 ----------------------------------------CACCTCTAGCACTAGTGGAT 20
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 CATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGA 359
consensus_5755#1 NCCCGCGGCTGCAGGAAATTCGTGTTTAATATG---GTATTGAGAGGGACGGCGGATCGA 77
consensus_5755#2 ------------------------------------------------------------
consensus_5755#0 TTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGAT-ATTGA 418
consensus_5755#1 TTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGAT-ATTGA 136
consensus_5755#2 ---------AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTA 51
* * * *** * * * ******* *** ** * * *
consensus_5755#0 CGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGA 478
consensus_5755#1 CGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGA 196
consensus_5755#2 CTGATTGATTCTTCTCATTGATACCCGTATTAACTA-CAATGGATAAATAATGACTAAAA 110
* * * * * * * * * *** * * * * ** * ** *
consensus_5755#0 AGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGC-ACTAGATGGTGTAACCCCGA 537
consensus_5755#1 AGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGC-ACTAGATGGTGTAACCTCGA 255
consensus_5755#2 TAAAATATAACAACTTGCTTTT--CAAAATCTTACCTACCAACAAACTCTTTGACATCGG 168
** * *** **** * * *** * * * * * * * ** **
consensus_5755#0 CAGATGGTCGCATCATATTCATGACTACAA-CTATATCGATCGACTTGAT---------- 586
consensus_5755#1 CAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAA 315
consensus_5755#2 CT-ACAATCGTTTCAGCTATACCATCACGCAGTATGACAG--AATTTAAA---------- 215
* * *** *** * * * ** *** * * ** *
consensus_5755#0 -----------------------
consensus_5755#1 TACGACCCCCCATCCATCACAAG 338
consensus_5755#2 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||