These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5755#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGACCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTCGACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCAAAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTTATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAACAGCCTTAGCAGGCCATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCCCGACAGATGGTCGCATCATATTCATGACTACAACTATATCGATCGACTTGAT] [+] EMBL CD096612 [TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGACCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTCGACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCAAAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTTATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAACAGCCTTAGCAGGCCATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCCCGACAGATGGTCGCATCATATTCATGACTACAACTATATCGATCGACTTGAT] consensusID : consensus_5755#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 338 fasta sequence [CACCTCTAGCACTAGTGGATNCCCGCGGCTGCAGGAAATTCGTGTTTAATATGGTATTGAGAGGGACGGCGGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCTCGACAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAATACGACCCCCCATCCATCACAAG] [+] EMBL BG930428 [CACCTCTAGCACTAGTGGATNCCCGCGGCTGCAGGAAATTCGTGTTTAATATGGTATTGAGAGGGACGGCGGATCGATTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGATATTGACGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGAAGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGCACTAGATGGTGTAACCTCGACAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAATACGACCCCCCATCCATCACAAG] consensusID : consensus_5755#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTACTGATTGATTCTTCTCATTGATACCCGTATTAACTACAATGGATAAATAATGACTAAAATAAAATATAACAACTTGCTTTTCAAAATCTTACCTACCAACAAACTCTTTGACATCGGCTACAATCGTTTCAGCTATACCATCACGCAGTATGACAGAATTTAAA] [+] EMBL CD156568 [AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTACTGATTGATTCTTCTCATTGATACCCGTATTAACTACAATGGATAAATAATGACTAAAATAAAATATAACAACTTGCTTTTCAAAATCTTACCTACCAACAAACTCTTTGACATCGGCTACAATCGTTTCAGCTATACCATCACGCAGTATGACAGAATTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5755#0 TTTTTATTGATTTGCTCGAGGAGGCTAGAGAAGAAGCTCTTGCACGTGAAAAAGGTTGGA 60 consensus_5755#1 ------------------------------------------------------------ consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 CCGTTGTTTACAAGGCTGTTGGTTCAGAATGGCACCAGTTTGGTTATCCTCGTCCACGTC 120 consensus_5755#1 ------------------------------------------------------------ consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 GACCTTTAAATTCTGTCATACTGCGTGATGGTATAGCTGAAACGATTGTAGCCGATGTCA 180 consensus_5755#1 ------------------------------------------------------------ consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 AAGAGTTTGTTGACAATCAGGCCTGGTATACTGATCGTGGTATACCATATTATCGTGGTT 240 consensus_5755#1 ------------------------------------------------------------ consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 ATTTATTATATGGACCGCCAGGATGTGGCAAAACTAGTTTCATAAC-AGCCTTAGCAGGC 299 consensus_5755#1 ----------------------------------------CACCTCTAGCACTAGTGGAT 20 consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 CATTTAGATTATAGCATTAGCATATTAAATTTAAGCGAATTCGGCATGACGGCAGATCGA 359 consensus_5755#1 NCCCGCGGCTGCAGGAAATTCGTGTTTAATATG---GTATTGAGAGGGACGGCGGATCGA 77 consensus_5755#2 ------------------------------------------------------------ consensus_5755#0 TTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGAT-ATTGA 418 consensus_5755#1 TTAGATCATTTATTAACACATGCACCGCTTCAAACTATCATTTTACTTGAGGAT-ATTGA 136 consensus_5755#2 ---------AAACTTAAACAAAAATTTCCCTGGATTATCATTCAACTAATATATCAGTTA 51 * * * *** * * * ******* *** ** * * * consensus_5755#0 CGCAGCAGTGCATAATCGTAACTCATCAAATAATGATCTACTTCATAGCAAAGCTTATGA 478 consensus_5755#1 CGCAGCAGTGCATAATCGTAACACATCAAATAATGATCTACTTCATAGCAAAGCTTATGA 196 consensus_5755#2 CTGATTGATTCTTCTCATTGATACCCGTATTAACTA-CAATGGATAAATAATGACTAAAA 110 * * * * * * * * * *** * * * * ** * ** * consensus_5755#0 AGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGC-ACTAGATGGTGTAACCCCGA 537 consensus_5755#1 AGGTATGCCAACACTCACTTTAAGTGGATTGTTAAATGC-ACTAGATGGTGTAACCTCGA 255 consensus_5755#2 TAAAATATAACAACTTGCTTTT--CAAAATCTTACCTACCAACAAACTCTTTGACATCGG 168 ** * *** **** * * *** * * * * * * * ** ** consensus_5755#0 CAGATGGTCGCATCATATTCATGACTACAA-CTATATCGATCGACTTGAT---------- 586 consensus_5755#1 CAGATGGTCGCATCATATTCATGACTACAAACTATATCGAGCGACTTGATCCTGCTCTAA 315 consensus_5755#2 CT-ACAATCGTTTCAGCTATACCATCACGCAGTATGACAG--AATTTAAA---------- 215 * * *** *** * * * ** *** * * ** * consensus_5755#0 ----------------------- consensus_5755#1 TACGACCCCCCATCCATCACAAG 338 consensus_5755#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||