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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence
[CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG--TTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT]
[+] EMBL CD083230 [CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGAATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTG TTNT ]
[+] EMBL CD080104 [ GGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACTTTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTAGACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATACTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATAAACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGAATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCACTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTTCTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGCATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAG TTNGTTGGNTTNTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCTGAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGACTATTTCAGATGCAGCAATACCTAATTTCCTTTTCTNACACACCGTACTTGTAACTGCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANTATGGNTCAGATACTAAAGGGGTTTCGTGAGCTGTCGGCATT]
consensusID : consensus_5756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA]
[-] EMBL CD076801 [TCAACAGAGTAGATAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGTTCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTTGAGGTGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTACCCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAACTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTTACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCGTGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCCGATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTAAATAAACGACGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5756#0 CTCCCGGCCAAGATTCGGCACGAGGCCAATGTTGGCAACGTAATAAAAACATTAAGAAGA 60
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 ATCAAATGGACAATGTATTTTTTAACTTATTTGGGGGAAATGGGATAATAGGATAGTACT 120
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 TTATCTAGTACTTAACTTTTGATCCCTTATTCACTACATTATCGTTGAAAATATGATTTA 180
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 GACAAACAGAAAAGTATCACTTAGTGCAGTCCTGTTTTGTTGAAAATATTTATGAAAATA 240
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 CTCAAAAAGAAACAACGGAAAACTAATGGATAACCTTTTTAATGTCCAAGCGGAATGATA 300
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 AACGTCTCATTTTTTTGTCAGGTTATCCACTTAACGTGGTGAGGATCTATGGGAATTTGA 360
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 ATTTTAATGCCAACATAATTGTACGGATATATATTCTGATTGCGTTTTATCGAAGTTTCA 420
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 CTTGTAAAATATTAATTATATTGTACATTTTGGTGATAACTGTACACAATTTTATTCGTT 480
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 CTCATCTCTTCCAAATAAATTCATTAACAGTTAAGTTACTTGAACGTTCAGTGTTTTCGC 540
consensus_5756#1 ------------------------------------------------------------
consensus_5756#0 ATCTATTTTGTACATTCACTATCCATATTTGAACTACACACTGGATTACAACAGAGTAGA 600
consensus_5756#1 -----------------------------------------------TCAACAGAGTAGA 13
************
consensus_5756#0 TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGNTTGGTTGTTNTGAAGT 660
consensus_5756#1 TAAAAAATAACTAAATTTGTCAACCAATCAATATATTATGGAGTTTGTTGGTTTTGAAGT 73
******************************************* *** * *** ******
consensus_5756#0 TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATCT 720
consensus_5756#1 TCTATTTGTACTCATAAAGCTCTTCATGGATTATAGACCGGACCGAACTCGTAGCAATTT 133
********************************************************** *
consensus_5756#0 GAGGGTGGATTGTTTCAAGTGACGAANATTGATATATTATCTGGTTCACTTTTTATGTAC 780
consensus_5756#1 GAGG-TGGATTGTTTCAAGTGACGAAAATTGATATATTATCTGGTTCACTTTTTATGTAC 192
**** ********************* *********************************
consensus_5756#0 CCTTGA-CTATTTCAGATG-CAGCAA-TACCTAATTTCCTTTTCTNACACAC---CGTA- 833
consensus_5756#1 CCTTGAACTATTTCAGATGGCAGCAAATACCTAATTTTCCTTTTTTTCACACAACCGTAA 252
****** ************ ****** ********** * *** * ***** ****
consensus_5756#0 CTTGTAACT-GCATTCACCACTCTTACCATGAGTCAACCTAGCTTTATCTACTCATTANT 892
consensus_5756#1 CTTGTAACTTGCATTCCCCCAACTCTGTAGCAATGAGTCCAACCCTATGCTTTTATTTTT 312
********* ****** ** ** * * * * * * * *** * *** *
consensus_5756#0 A-TGGNTCAGATACTAAA---GGGGTTTCGTGAGCTGTCGGCATT--------------- 933
consensus_5756#1 ACTCCATTAAGTATTGGTTTCATGATTACGTAAAGTGTGTTTTTCGTTGATGCTGTTTCG 372
* * * * ** * * ** *** * *** *
consensus_5756#0 ------------------------------------------------------------
consensus_5756#1 TGCAATATTTTATTAGTATTTATCGTGAGGTATTTTTATGCCAATCAATTATCGTTTCCC 432
consensus_5756#0 ------------------------------------------------------------
consensus_5756#1 GATAGTACTAACCGAATATTGTTATAATACCCCAGAATGTAACCTCTTTTTTTTGGATTA 492
consensus_5756#0 -------------
consensus_5756#1 AATAAACGACGCA 505
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||