These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence [AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGACCCCCAGTCTGACCAAGAATTTGTAATACATAGAAATAAAGCCATCTGTGCCAAAGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGATTGATTTC] [+] EMBL CD127915 [AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGACCCCCAGTCTGACCAAGAATTTGTAATACATAGAAATAAAGCCATCTGTGCCAAAGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGATTGATTTC] [-] EMBL CD183944 [ AGTTGGATCTGACAGAGGATTATCCCCACCTAGTCCTCCACTTGTAATTCTTGTTCCTCCTGCTCCACCACCACCAACTTTGTTTCGAGATTTTTTCGGTAGTGCACCTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAGA ] consensusID : consensus_5757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 350 fasta sequence [ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGTAACACGCCATTATTTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTAAATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTAGCATTGCATGGGGTCCAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCATCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGAGA] [+] EMBL BG931373 [ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGTAACACGCCATTATTTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTAAATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTAGCATTGCATGGGGTCCAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCATCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTAGTTCGACGACCAACACCACAAGTAACTGAACACGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5757#0 AAGCCTATAGTAGGTAAGGATCTTCTATTCTCACCTCTTCTTCAACCAATGGACCATG-- 58 consensus_5757#1 ---ATCACAATCTGTTTCTTTTGGCTGACATTCCCTCATTTCCCGT-AACACGCCATTAT 56 * * * ** * ** * **** * * * ** **** consensus_5757#0 TTGACAAAGCTCTGTCTTCCTATTGATCAGCATGGCACGTTGTCTA-GTTCGACGACCAA 117 consensus_5757#1 TTGACTCAGTTTCACTTTGAAATATGTGCTCACAATAATTCTTTTCTGATGAGCGGGCTA 116 ***** ** * ** ** * ** * * * * * * ** * * consensus_5757#0 CACCACAAGTAACTGAACACGACCCCCA-GTCTGACCAAGAATTTGTAATACATAGAAAT 176 consensus_5757#1 AATAACGTGTACGTGTTTGCCAGCCATGCGGTTGATCGCAAGTA-GCATTGCATGGGGTC 175 * ** *** ** * * ** * *** * * * * * * *** * consensus_5757#0 AAAGCCATCTGTGCCAA--AGTTGGATCTGACAGAGGA-TTATCCCCACCTAGTCCTCCA 233 consensus_5757#1 CAAGCAGTCCATGGTAATAAGCTGCACATAGCACTGAAATCACATGTGCGTTTTATACCA 235 **** ** ** ** ** ** * * ** * * * * * * * *** consensus_5757#0 CT-TGTAATTCTTGTTCCTCC--TGCTCCACCACCACCAA-CTTTGTTTCGAGATTTTTT 289 consensus_5757#1 TCACATGACTCTTCTTCAACCAATGGAACATGTTGACAAAGCTCTGTCTTCCTATTGAT- 294 * * **** *** ** ** ** ** ** ** *** * *** * consensus_5757#0 CGGTAGTGCAC-CTGTCAAATCCCCTACAACTGACTGAACTATAGGAGAATGTTTATTAG 348 consensus_5757#1 CAGCATGGCACGTTGTCTAGTTCG--ACGACCAAC---ACCACAAGTAACTGAACACGAG 349 * * * **** **** * * * ** ** ** ** * * * * ** * ** consensus_5757#0 ATTGATTTC 357 consensus_5757#1 A-------- 350 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||