These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5760#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 526 fasta sequence [CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGCTAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATA-TTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA] [+] EMBL AI067915 [CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGCTAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATA TTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA] [-] EMBL CD064090 [ AGTTTGAATCTGGGGGTGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATANTTAGTCTCCCTGTTcta ] consensusID : consensus_5760#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [ACTCTTGTGATTTGTTGCATGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTAGACCGGGTACATTTTGTACGTG] [+] EMBL CD114648 [ACTCTTGTGATTTGTTGCATGGATGATTACGTGTTTCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCTCCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATCGTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCAAATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATACTTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTCTTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTTCGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTAGACCGGGTACATTTTGTACGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5760#0 CAACACTGTTGTTACCCACATCCCTACCGCGTTTTCTACTTTTTGTGTTCAGGGATGTGC 60 consensus_5760#1 ------------------------------------------------------------ consensus_5760#0 TAAGAACTATCACATTCAGGTTGGCTCAAGTTTGAATCTGGGGGTGGATGATTACGTGTT 120 consensus_5760#1 -----------------------ACTC--TTGTGATTTGTTGCATGGATGATTACGTGTT 35 *** * *** * * **************** consensus_5760#0 TCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCT 180 consensus_5760#1 TCTAACCTGTGAAAAGTGCATGTATTCAACCCGTTTTATTCCACACTCGTATATTAGTCT 95 ************************************************************ consensus_5760#0 CCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATC 240 consensus_5760#1 CCCTGTTAACACTCAGTGAAAATTTATCTTAATATGGAAGTAGATAAATACACGTTAATC 155 ************************************************************ consensus_5760#0 GTCCGGAATTTGCAGGAGGTAGTACGTGATGATGAACTTCAAAATCTTTTAAAGAAACCA 300 consensus_5760#1 GTCCGGAATTTGCAGGAGGTAGTAGGTGATGATGAACTTCAAAATCTTTTAAAGAAACCA 215 ************************ *********************************** consensus_5760#0 AATTCATCACTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATAC 360 consensus_5760#1 AATTCATCAGTGTCTGTGTATTGGGGTACTGCAACAACTGGTAGACCTCATATAGCATAC 275 ********* ************************************************** consensus_5760#0 TTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAATATCACTGTACTC 420 consensus_5760#1 TTTGTTCCAATTATTAAGCTGGCTGATATGCTGAAAACCGGTGCAAAAGTCACTGTACTC 335 *********************************************** *********** consensus_5760#0 TTTGCTGACTTACACGCATATCTAGATAATATGAATGCTCCATGGTCTTTGCTTTGTCTT 480 consensus_5760#1 TTTGCTGACTTACACGCATATCTAGATAATATGAAGGCTCCATGGTCTTTGCTTTGTCTT 395 *********************************** ************************ consensus_5760#0 CGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAA-------------- 526 consensus_5760#1 CGTACAAAATATTATGAAGCTGTTATAAAAGGAATGTTCCGTTCAATTTGTGTCCCATTA 455 ********************************************** consensus_5760#0 ---------------------- consensus_5760#1 GACCGGGTACATTTTGTACGTG 477 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||