These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5765#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 981 fasta sequence [CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATTTAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTAGTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAATTAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATCAGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTTTAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATTTATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTATTTCGACTTCGTTCCGTTATTCTCTCTTTCTTTCTCTAGAAAATAAAATAAGAAATACTCCCTCTACCTTNCTACTGNNCTGTCATATTGTGNGCCCTTAATCCCAANGCTATTGACATATGATNNTCACCNGTATACACGTCTTGCNGACTGCTGAACTTTCCGGNTATTTACAGATGAGTTCATCTCTTTAGCATCATAATATTNGGACGACANNATAGATGGGGGATNCTTCTGATGAATCNNNATATAATGTAACATA] [+] EMBL CD082461 [CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATTTAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTAGTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAATTAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATCAGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTTTAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATTTATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTATTTCGACTTCGTTCCGTTATTCTCTCTTTCTTTCTCTAGAAAATAAAATAAGAAATACTCCCTCTACCTTNCTACTGNNCTGTCATATTGTGNGCCCTTAATCCCAANGCTATTGACATATGATNNTCACCNGTATACACGTCTTGCNGACTGCTGAACTTTCCGGNTATTTACAGATGAGTTCATCTCTTTAGCATCATAATATTNGGACGACANNATAGATGGGGGATNCTTCTGATGAATCNNNATATAATGTAACATA] consensusID : consensus_5765#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTATTTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAACTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTATTTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCGGTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATATAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATATA] [-] EMBL CD076060 [AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATTACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTATTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAATCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGATTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTATTTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAACTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTATTTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCGGTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATATAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATATA] consensusID : consensus_5765#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [CCTCGCAGCCAAGAATTCGGTTCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGACGATTCGCCAACGTCCGTTGAGTTTTATAAACCTTATAATCGTTGGACCAAGGGTCTTTTATCGGCTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTTGTGGAAAAGACGTAAAATTAGAGCGCTTAATCGTAATTTCACAAGAGATAGCTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATANATTACAATTAACTAGTANAGAAGTATGNCAGTGTACTGNAAATT] [+] EMBL CD077702 [CCTCGCAGCCAAGAATTCGGTTCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGACGATTCGCCAACGTCCGTTGAGTTTTATAAACCTTATAATCGTTGGACCAAGGGTCTTTTATCGGCTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTTGTGGAAAAGACGTAAAATTAGAGCGCTTAATCGTAATTTCACAAGAGATAGCTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAATGTTCAATANATTACAATTAACTAGTANAGAAGTATGNCAGTGTACTGNAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5765#0 CCTCGAGGCCAAAAATTCGGCACGAGGTTTATGCTACTCGTGTAAAAACTACTTCACAAT 60 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 CTGAAATGTTCAATAAATTACAATTAACTAGTAAAGAAGTATGCAAGTGTACTGGAAATT 120 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 TAATTGCATGTGTAAAAAAGGCAATTGAAGCAAAACATATAGAAGAACTTGATTTTAGTA 180 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 GTCTTACATTAACTCAAGCAAAACGTATGGAAGTTGAACTACAAGTGAAAATTATTGAAT 240 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 TAGAAACATCGTTAACAAATGAACGACAACGTTTAGCTCAATTAAGAAGAGATAATTATC 300 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 AGTTATCAGCTGAAGTAGAGTTGATCAACGAGAGATAATGAGAAACTCCCAATGAACGTT 360 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 TAACAAATAAAGCAGTCTACAAATCTCAAATCTACCTTCCAAATTAAATGTAAATAGATT 420 consensus_5765#1 ------------------------------------------------------------ consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 TATTTCAACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATT 480 consensus_5765#1 ------AACAGCTTATCTACCTACGTTATTCTCACCAAAATTTGTTATCTTGCTACTATT 54 consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 ACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTA 540 consensus_5765#1 ACCACAATCGTTACTACCACTCCAGTAATCAGTTAGTATGCATACCTAAGTCTTTCATTA 114 consensus_5765#2 -------------------------------------CCTCGCAGCCAAGAATTCGGT-- 21 * * * *** ** * consensus_5765#0 TTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAA 600 consensus_5765#1 TTCAAAATAACTCTCCCTATTATTGTGTGCATCAGCGGCACAAGGAAGAGTGACACAAAA 174 consensus_5765#2 -TCGAGGTGATCTAGTGAAACAATCTAAATTGATTCAACAGGAGTTTGA-CGATTCGCCA 79 ** * * * * * * * * ** ** ** ** * * consensus_5765#0 TCATATATTCAACTTTATACTTGATTNTCATCATTNTGTTCTTGCATGATCTCATATTGA 660 consensus_5765#1 TCATATATTCAACTTTATACTTGATTTTCATCATTTTGTTCTTGCATGATCTCATATTGA 234 consensus_5765#2 ACGTCCGTTGAGTTTTATAAACC-TTATAATCGTTGGACCA----AGGGTCTTTTATCGG 134 * * ** * ****** ** * *** ** * * *** *** * consensus_5765#0 TTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTNTAT 720 consensus_5765#1 TTATTTAGTGATATGACGTTTGTTTTCTTTCTACCTAGAGAATGGAACATTGCTTTTTAT 294 consensus_5765#2 CTGCTAAGTTTGTCGGTGCTAGTGCTAATGTCATGGTTGAAATAGCTGATTCCATAGTTT 194 * * *** * * * ** * * * *** * *** * * * * consensus_5765#0 TTCGACTTCGTTCCGTTATTCTCTCTTTCTTTC-TCTAGAAAA-TAAAATAA-GAAATA- 776 consensus_5765#1 TTCGACTTCGTTCCGTTATTCTCTCTTCCTTTCCTCTAGAAAAATAAAATAAAGAAATAA 354 consensus_5765#2 GTGGAA---AAGACGTAAAATTAGAGCGCTTAATCGTAA-----TTTCACAA-GAGATAG 245 * ** *** * * *** ** * * ** ** *** consensus_5765#0 CTCCCTCTACCTTNCTACTGNNCTGT-CATATTG--TGNGCCCTTAATCCCAANGCTA-- 831 consensus_5765#1 CTCCCTCTACCTTCTTACTTGTCTGTTCATATTTGTTGTGCCCTTAATCCCCAAGCTTAT 414 consensus_5765#2 CTGCTAGTACAACTCAATTGGTTTATGCTACTCGTGTAAAAACTACTTCACAATCTGAAA 305 ** * *** * * * * * * * ** ** * * consensus_5765#0 TTGACA-TATGA--TNNTCACCNGT-ATA-CACGTCTTGCNG-ACTGCTGAACTTTCC-G 884 consensus_5765#1 TTGACAATATTGATTTTTCACCCGTTATAACACGTCTTGCGGGACTGCTGAACTTTCCCG 474 consensus_5765#2 TGTTCAATANATTACAATTAACTAGTANA-GAAGTATGNCAG-TGTACTGNAAATT---- 359 * ** ** * * * * * * ** * * * * *** * ** consensus_5765#0 GNTATTT-ACAG-ATGAGTT-CATCTCTTTAGCA--TCATAAT-ATTNGGA-CGACANNA 937 consensus_5765#1 GTTATTTTACAGCATGAGTTTCATCTCTTTAGCAATTCATAATTATTTGGATCGACAATA 534 consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 TAG-ATGGGGGATNCTTCTGATGAATCNNNATATAATGT-AACATA-------------- 981 consensus_5765#1 TAGTATTGTGTGATTTCTTTCTGAATGAATACTTATTATTAATATGTTAAACAATAATAT 594 consensus_5765#2 ------------------------------------------------------------ consensus_5765#0 - consensus_5765#1 A 595 consensus_5765#2 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||