These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATACATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGACCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAGTTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATCAAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCATACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAAGATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCATAGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAATAAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGATCACAATGTATAAGGTGATCATTGTTTGATATGGAAAACAAAATGTCTCGTAAATTGACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGATTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA] [+] EMBL CD081130 [GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATACATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGACCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAGTTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATCAAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCATACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAAGATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCATAGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAATAAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGATCACAATGTATAAGGTGATCATTGTTTGATATGGAAAACAAAATGTCTCGTAAATTGACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGATTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA] consensusID : consensus_577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [AGGTGATCCTTGTTTGATATGGAAAACAAAATGTTTTGTAAATTGACTGTTAGATTATAAAATGGAAGTGTTTAACTGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACATTTACCTTTTTTTTGAAAGACAATAAGTTATAATGTGTAGATTACATCCTGCGAAATCGCTTACTTTTTTATCCCGGTTATTTTAGCTTTCCCTTTGACTTAAGCATCGGAAAAGGAAAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATAATTTAAATAATTGTAATTACGGTCCTTTAAATACACGTTTTTATATCCTACCTTTTGTTTAACTTCCTACATGTTTCCATAAGCCACGACGTTAATATAAACCCATG] [-] EMBL CD074953 [AGGTGATCCTTGTTTGATATGGAAAACAAAATGTTTTGTAAATTGACTGTTAGATTATAAAATGGAAGTGTTTAACTGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACATTTACCTTTTTTTTGAAAGACAATAAGTTATAATGTGTAGATTACATCCTGCGAAATCGCTTACTTTTTTATCCCGGTTATTTTAGCTTTCCCTTTGACTTAAGCATCGGAAAAGGAAAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATAATTTAAATAATTGTAATTACGGTCCTTTAAATACACGTTTTTATATCCTACCTTTTGTTTAACTTCCTACATGTTTCCATAAGCCACGACGTTAATATAAACCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_577#0 GAGGATTACTCAATTTGCACAAATCCACGTTCTGGTAATCAATTTAGTGTTTAACAATAC 60 consensus_577#1 ------------------------------------------------------------ consensus_577#0 ATAAAACAATAGAAATCTATTGACAAGTAGGTCTTATAAAATGTCTAAACCGGAAGTTGA 120 consensus_577#1 ------------------------------------------------------------ consensus_577#0 CCTTCACTTTTAGAAAAGATTATAGTTAATATTGAACAGACTGTCAAAAATCCACTAAAG 180 consensus_577#1 ------------------------------------------------------------ consensus_577#0 TTTATCCAACGATCAGTACTCTGTTGGAAATTTAAAGGATTCAAGGATAAAATCTTCATC 240 consensus_577#1 ------------------------------------------------------------ consensus_577#0 AAGACAAAATGAATTATCATCATTCATTGATGAATAGCTAAGTTCATCTTCAGATTGCAT 300 consensus_577#1 ----------------------------------------AGGTGATCCTTGTTTGATAT 20 ** * *** * * ** consensus_577#0 ACAAGCTAGAAGGTTTCCCAAAATGTCTTATTCTAACTGAAGACGGATTACGCTAATGAA 360 consensus_577#1 GGAAAACAAAATGTTTTGTAAATTGACT-GTTAGATTATAAAATGGAAGTGTTTAAC--- 76 ** * ** **** *** ** ** ** * ** * *** *** consensus_577#0 GATGGTAAGGTCTACTTATAAATAGAATATCTTGCTTGTTTAAATGTATAAACGAACCAT 420 consensus_577#1 --TGGTAAATTTTATTTGCCAAAGATTTGATTTGATTTTGCCAATGAACCAGGGGAACAT 134 ****** * ** ** ** * *** ** * **** * * * * *** consensus_577#0 AGAAATAGTTTCGTAGAGAATCTCAAATGTCCCATTATTAAAAATCTACATTTATGTAAT 480 consensus_577#1 TTACCTTTTTTTTGAAAGAC-----AATAAGTTATAATGTGTAGATTACATCC-TGCGA- 187 * * *** * *** *** ** ** * ***** ** * consensus_577#0 AAATGTCCATATGTATCTACCGACACCTAGTTGGTATTGGATAATAACGAAGTTATTTGA 540 consensus_577#1 AATCGCTTACTTTTTTATCCCGGT---TATTTTAGCTTTCCCTTTGACTTAAGCATCGGA 244 ** * * * * * * *** ** ** ** * ** * ** ** consensus_577#0 TCACAATGTATAAGGTGATCATTGTTTGATATGGAAAAC----AAAATGTCTCGTAAATT 596 consensus_577#1 AAAGGA------AAACGAACCACGTGCCATATAAAAGTTTTCAGGAATGATTTGGATATA 298 * * * ** * ** **** ** **** * * * ** consensus_577#0 GACTGTTAGATTATAAAGTGGAAGTGTTTAACTGGTAAATTTGATTTGCAAATGATTTGA 656 consensus_577#1 ATTTAAATAATTGTAAT-TACGGTCCTTTAAATACACGTTTTTATATCCTACC--TTTTG 355 * *** *** * ***** * *** ** * * * *** consensus_577#0 TTCGATTTTGCAAATGAACCAGGGAAACATCTACCTTCTTTTCGAAAGACATAGTTATA 715 consensus_577#1 TTTAACTTCCTACATGTTTCCATAAGCCA-CGACGTTAATAT--AAACCCATG------ 405 ** * ** * *** * * ** * ** ** * * *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||