These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5772#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 750 fasta sequence [ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACAGAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAGCTTATAACAGTCCTCATGAACGACAATACCACAACCATCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCCTCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCTGTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACTAAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTGAATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATGTACGTAAAGAANAACAGCGT] [+] EMBL CD126782 [ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACAGAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAGCTTATAACAGTCCTCATGAACGACAATACCACAACCATCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCAT ] [+] EMBL CD150389 [ GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAATCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCCTCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCTGTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACTAAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTGAATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATGTACGTAAAGAANAACAGCGT] consensusID : consensus_5772#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [GACCATTCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTATTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAATCATCTTCATC] [-] EMBL CD064138 [GACCATTCACATTCGATCAGCTCATCACGAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTTTCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTATTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTGTCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGACTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAATCATCTTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5772#0 ACATTCAACACTGGACATAACTCACAAACCGGGGAAGTGAGCCGCAAGACATGGTTCACA 60 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 GAACCACGCATCTGTACTTGAGGAGCTAGCACCACTGGACAAAAATATTGAGTCAACCAG 120 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 CTTATAACAGTCCTCATGAACGACAATACCACAACCAT-CACATTCGATCAGCTCATCAC 179 consensus_5772#1 --------------------------------GACCATTCACATTCGATCAGCTCATCAC 28 ***** ********************* consensus_5772#0 GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCTTTTATTT 239 consensus_5772#1 GAGGATCAGTATTATCTCCCAAACACAGCATACAAATCATGATATCAATATCGTTAATTT 88 **************************************************** ** **** consensus_5772#0 TCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCC----------------- 282 consensus_5772#1 TCGCATTATCACTAGCAATCAAATTTTGATCACCATCTGGCCCTGAAGTATTAAAGGGTA 148 ******************************************* consensus_5772#0 --------------------------------AGTACAAAATGACTCCGGTGCCCATGTG 310 consensus_5772#1 TTTCAGAACATGATCCCATTCAATAGGTTACCAGTACAAAATGACTCCGGTGCCCATGTG 208 **************************** consensus_5772#0 TCTTTCTCATTTTTTACGGAATTAGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGA 370 consensus_5772#1 TCTTTCTCATTTTTTACGGAATTGGGTGAATTCCTTTCAGATCTAGACACGGAAATCTGA 268 *********************** ************************************ consensus_5772#0 CTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTCTGGACTAGAA 430 consensus_5772#1 CTTGTACCAGAAACTGCAGAAACGTTGGATAAGTCAACTGAAGAGTCGTGTGGACTAGAA 328 ************************************************* ********** consensus_5772#0 TCATCTTCATCAGTACAACCTGAGTGCGTCTCCTCATCATCATCTTCCTCATCCCTATCC 490 consensus_5772#1 TCATCTTCATC------------------------------------------------- 339 *********** consensus_5772#0 TCGCAAACGTACTCGCTGTCGCTGTCATCGTCCAGCTCATCAAGCAAAGCCAAGTGGTCT 550 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 GTATTTACAGGTTTTATCTGCCTCTTCGATGGATCACGACGAGCTGGAGGATATCTAACT 610 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 AAAAAGGTGAATAACTACCTATTGCAGTGAATAGGGTATCTGATGTCATTACAGGACCTG 670 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 AATGAAAGGTCAATACTGATTTCAGTGTTCTTTATGTCTTTNTGGAAAGTATTCAGAATG 730 consensus_5772#1 ------------------------------------------------------------ consensus_5772#0 TACGTAAAGAANAACAGCGT 750 consensus_5772#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||