These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5795#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 755 fasta sequence [TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCTTAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAAGTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGA-ATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCANACGTGCCANATTATGTGATTACTCTCATC-AACGATTGAC-AATG-AAAGCTTAAATG-TGA-TCATTTG-A-CACTGA-TACTA-GAAATATATTTTTCA] [+] EMBL CD080399 [TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCTTAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAAGTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGA ATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCANACGTGCCANATTATGTGATTACTCTCATC AACGATTGAC AATG AAAGCTTAAATG TGA TCATTTG A CACTGA TACTA GAAATATATTTT ] [-] EMBL CD074314 [ CATATTGTTGGCTTGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGANATTTGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGTTTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATGTGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCAACGGATGAAAAGGAACAATTAAATCCAGATTTTCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCGGAGTATAAAATTCATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTT AATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTCA] consensusID : consensus_5795#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [ATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGACAAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCGGAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTTAATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC] [-] EMBL CD074491 [ATCTCTAATAAACTATGTATAAATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTCGGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGACAAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCGGAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTTTTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTTAATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5795#0 TCGGCACGAGGGGGCAGGGCAAAACATCAACTATAATCCAAATGAGCCAACTGAAGACCT 60 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 TAAAGCATTTGAGCGTCGTCTTCGTGAAATTATCAATGGTTTAGGTCCGAAAGCATTTAA 120 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 GTGGCGAATTGTCCTGTCTGTAGCTGTACTTATACACCTATGTTCATCATATTGTTGGCT 180 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 TGTCGACCCTGTCACATACCAAGCCGGTTTTATCGGTTCCTTGGAAAAACATCCAGAATT 240 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 TGTATTAAGTCTTTTGTTCCTCATGGCTCTCTTTTTTTTGGGAGCACATAAAAAGGTCGT 300 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 TTTGCCTAGTATCATAGCTCATCGCAGCCGAATTGTTTTGGCAGAATATAATATGGCATG 360 consensus_5795#1 ------------------------------------------------------------ consensus_5795#0 TGATAATTCTGGAAAGCTCATTTTAAGACCTAAACCTAATCTCTAATAAACTATGTATAA 420 consensus_5795#1 --------------------------------------ATCTCTAATAAACTATGTATAA 22 ********************** consensus_5795#0 ATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTC 480 consensus_5795#1 ATGCGTCGTGTACATAATGTATAAAAATCAGCCGTTAAGTCTTTCATTATAGTTTGCTTC 82 ************************************************************ consensus_5795#0 GGACTATATGGATATATGTAGTCGTACTGAATAATGGTCAGTCA-ACGGATGAAAAGGAA 539 consensus_5795#1 GGACTATATGGATATATGTAGTCGTACTGAATAATGGTCGGGCACACGGAGGNNNGGGAC 142 *************************************** * ** ***** * *** consensus_5795#0 CAATTAAATCCAGATTT--TCAAGTTTATTATATCAATGTTCGTGTTATGAAGATTCCCG 597 consensus_5795#1 AAAAAAAAACAATAACCAATTTCAGTTATTATATCAATGTTCGTTGTATGAAGATTCCCG 202 ** *** * * * * ******************* ************** consensus_5795#0 GAGTATAAAATTCA-TATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTT 656 consensus_5795#1 GAGTATAAAATTCAATATTTACACTGTTTAGTAAGTTATTCGTGGGATTCTCCCCACTTT 262 ************** ********************************************* consensus_5795#0 TTTTCANACGTGCCANATTATGTGATTACTCTCATCAA-CGATTGACAA-TGAAAGCTTA 714 consensus_5795#1 TTTTCAAACGTGCCAAATTATGTGATTACTCTCATCAAACGATTGACAAATGAAAAGCTT 322 ****** ******** ********************** ********** ***** * consensus_5795#0 AATGTGA--TCATTTGA--CACTGAT-ACTAG-AAATATATTTTTCA 755 consensus_5795#1 AATGTTGATTCATTTGTACCACTGATTACTAGGAAATATATTTTTC- 368 ***** ******* ******* ***** ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||