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Schistosoma mansoni
cluster # 5800 cluster # 5800       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5800#0 length = 1060 sequences # 2  
consensus_5800#1 length = 448 sequences # 1  

consensusID : consensus_5800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1060
fasta sequence
                              [GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA]

[+] EMBL CD083208             [GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTN                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD076782             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTCTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA]


>consensus_5800#0 GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGA TAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAA CGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAG ATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATT AGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAAC ACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAAT GCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCT AGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCA TGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGAT TCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCG TAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAATTGTTAT AGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTT AATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTG TAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCT GTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTT TATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATC GTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCA TATTGACTTATACATTTATCAAATATATTTTTTATCGGTA



consensusID : consensus_5800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence
                              [AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG]

[+] EMBL CD084191             [AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG]


>consensus_5800#1 AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCA TCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGT TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC AGAAATGCTGCTATTAACAACAGATTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5800#0      ------------------------------------------------------------
consensus_5800#1      AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCA 60
                                                                                  

consensus_5800#0      ------GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGT 54
consensus_5800#1      TCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGT 120
                                 **      *  *  *   *******************************

consensus_5800#0      TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 114
consensus_5800#1      TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 180
                      ************************************************************

consensus_5800#0      TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 174
consensus_5800#1      TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 240
                      ************************************************************

consensus_5800#0      TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 234
consensus_5800#1      TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 300
                      ************************************************************

consensus_5800#0      ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 294
consensus_5800#1      ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 360
                      ************************************************************

consensus_5800#0      TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 354
consensus_5800#1      TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 420
                      ************************************************************

consensus_5800#0      AGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAAT 414
consensus_5800#1      AGAAATGCTGCTATTAACAACAGATTTG-------------------------------- 448
                      ****************************                                

consensus_5800#0      TCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAA 474
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      TCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGT 534
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      ATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAAT 594
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      GTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAAT 654
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      TGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAAT 714
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      TTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGT 774
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      CATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATG 834
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      CCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAG 894
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      CTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACA 954
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      TGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATA 1014
consensus_5800#1      ------------------------------------------------------------
                                                                                  

consensus_5800#0      TGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA 1060
consensus_5800#1      ----------------------------------------------
                                                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)