These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5800#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1060 fasta sequence [GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA] [+] EMBL CD083208 [GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAATTCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAATCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTN ] [-] EMBL CD076782 [ TGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGTATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAATGTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTCTAAAACCGAGTTATAAATTGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAATTTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGTCATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATGCCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAGCTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACATGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATATGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA] consensusID : consensus_5800#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG] [+] EMBL CD084191 [AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCATCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGTTAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAATGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTACTGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCAATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAATCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTCAGAAATGCTGCTATTAACAACAGATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5800#0 ------------------------------------------------------------ consensus_5800#1 AGCACGAGGGTTAAACAGACTTGTGATACAGTACAAATATTCGAATGTACAGTCTATTCA 60 consensus_5800#0 ------GNAGCCAANATTCGGCACGAGGCCAACTTCTAAAGTGAATGAAACCTCTCCTGT 54 consensus_5800#1 TCATCATCTATCACATAGTGAAATAATTGCAACTTCTAAAGTGAATGAAACCTCTCCTGT 120 ** * * * ******************************* consensus_5800#0 TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 114 consensus_5800#1 TAATGATAATGTCAATAATGAGAATGTAATGGCTCCTGAAATAAATAACTTATCATGTAA 180 ************************************************************ consensus_5800#0 TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 174 consensus_5800#1 TGAAAACGATACTATGTGCTCTGAAATAGACAGTCAATCACTTATTCAGGGCACATTTAC 240 ************************************************************ consensus_5800#0 TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 234 consensus_5800#1 TGATAGATGTGATTTGATCGCAAAAGAACGCCAACGTATAAATAGAGAATTACGCGAGCA 300 ************************************************************ consensus_5800#0 ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 294 consensus_5800#1 ATTATTAGGTGGACATAAATCCAGCGATAAAAAATCATCAAATCATAGTAAAAATGAAAA 360 ************************************************************ consensus_5800#0 TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 354 consensus_5800#1 TCTAACACATTCCTCTGGACTTCTTCGTGAACAAGAAATTCAACGTGAGCAATTAGCTTC 420 ************************************************************ consensus_5800#0 AGAAATGCTGCTATTAACAACAGATTTGAAAAATCAATCTTCTGCAATGAATCAACGAAT 414 consensus_5800#1 AGAAATGCTGCTATTAACAACAGATTTG-------------------------------- 448 **************************** consensus_5800#0 TCGGCTAGATTGTGAAACTGTTGATGCTAGTATAGGACAAGTTGAGCGAAATACTGCAAA 474 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TCTTCATGGTATATTAAATGAATTATCATTAGAGCTTGGTTCCAAATGTGGTCGAATTGT 534 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 ATGGATTCTATTTTTTATCGCATTAGGTTTATTTTTATATATGATATTATTTATGAAAAT 594 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 GTTTCGTAAACGAGTTATTCAATCAAATTCTGTCTATTCTTNTAAAACCGAGTTATAAAT 654 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TGTTATAGAATGTGGATATTATTGTTGAGGTTAATTGCCTTTGTCAACAAAACACTAAAT 714 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TTTTTTAATGATTTTGACTCTTGTGCCTTAAACTATGCTGTGATATCTATTGTCAAAAGT 774 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 CATGTGTAATTAGCCTCTCTTCCTATTGGCTAGTCTCTCTTATCTAAGATCTTGTAAATG 834 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 CCATCTGTATACAGTGATGTTTATTTATTTCATTGGGTTCTTTTTAATGAAGTATAAAAG 894 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 CTCTTTTATAAAGTAAAGTCTCCTCTCTTTTCCACTCGCATGGAGTTTTCATAATTGACA 954 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TGTATCGTTGTGCATTATTAGCCTTTTGACATATCTAGTCAGGTTGAATACGATGTTATA 1014 consensus_5800#1 ------------------------------------------------------------ consensus_5800#0 TGTTCATATTGACTTATACATTTATCAAATATATTTTTTATCGGTA 1060 consensus_5800#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||