These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5804#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 560 fasta sequence [CCTCTGGNCAAGGGTGGNAAATCAGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTATGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATTTAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGAGATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATTTGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC] [+] EMBL CD167873 [CCTCTGGNCAAGGGTGGNAAATCAGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTATGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATTTAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGAGATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATTTGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC] consensusID : consensus_5804#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 471 fasta sequence [TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATACTCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGCTTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACTCATGAGACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT] [-] EMBL CD141110 [TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATACTCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGCTTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACTCATGAGACTGCATCACATGGCAAGCGTCAACATGGA ] [+] EMBL CD096150 [ AGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAAATCATGAAACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCAAAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGAATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGAGGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGTTATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5804#0 ------------------------------------------------------------ consensus_5804#1 TTCTCACAGCCATCATCAAAAACGTACAAGTATTTATAAACAAATGTCAAAGTAAGATAC 60 consensus_5804#0 ------------------------------------------------------------ consensus_5804#1 TCAATGTCTGTTCACCAGATACCATCAGGAACAACCTACTGTAGGAGAGAACAGACCAGC 120 consensus_5804#0 ------------------------------------CCTCTGGNCA-AGGGTGGNAAATC 23 consensus_5804#1 TTCCAACTGAGCAAATTACGAAAAGACGTTGGAAGTAAATAGGACATACTTTATGGAACT 180 ** ** * * ** consensus_5804#0 AGGGAAACTGCATCACATGGCAAGCGTCAACATGAAATCATGGTGGGAAGAGGAAGGCCA 83 consensus_5804#1 CATGAGACTGCATCACATGGCAAGCGTCAACATGGAATCATGGTGGGAAGAGGAAGGCCA 240 ** **************************** ************************* consensus_5804#0 AAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGA 143 consensus_5804#1 AAGAACATATTGAGTGCAGAATCGGAAGCAGATCAAAAGCATGAATAACAATTAGAAAGA 300 ************************************************************ consensus_5804#0 ATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGA 203 consensus_5804#1 ATTGTTGAGGACAGAGTTGAACGGGAAATGCTAGTGGGTGGCCTATGCTTCTCTACGTGA 360 ************************************************************ consensus_5804#0 GGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGT 263 consensus_5804#1 GGTAACAGGCATAGTTAACTATGTAATTAAGCAATCAAATACTGTTTTTTCCTACGTAGT 420 ************************************************************ consensus_5804#0 TATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGTCACGCGCTA 323 consensus_5804#1 TATCTACGTTTTTTGTACTAAATATATCGAGAACATCAAGCAAATTGAAGT--------- 471 *************************************************** consensus_5804#0 TGTAAACCTCTGGAATAGATTACCAGTAGACATCCGGTCAAGCCAAACGCTTATTCAATT 383 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 TAAATCCTTCCTTAACCGCTTTATGGACCGATTCCCACATGTTCCCACATGTTCGATGGA 443 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 GATTACCTAAACCAACCTGCATTTGACAATGGTCCATCCAACATCTAACCGACTGACATT 503 consensus_5804#1 ------------------------------------------------------------ consensus_5804#0 TGATAGCCATGCCACAAACTGAGATCATTTGACGCCGAATAGCCTCTGAAACTTTAC 560 consensus_5804#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||