These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 837 fasta sequence [GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGCCTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGCGAAGTGCGATGAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGC-ATCCGAAATG-AACGAGGTATTTGGCAGAAAGACTAT-AAGTTGGGAAATTTTGT-AATNTTT-CAGAAGAT-AAACGACTCGTG-ACTTAT-AAAC-TGC-ATCTAG-CATGT--ATATATAGTT] [+] EMBL CD082113 [GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGCCTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGCGAAGTGCGATGAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGC ATCCGAAATG AACGAGGTATTTGGCAGAAAGACTAT AAGTTGGGAAATTTTGT AATNTTT CAGAAGAT AAACGACTCGTG ACTTAT AAAC TGC ATCTAG CATGT ATATATA ] [-] EMBL CD075729 [ TCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGGTGAACGTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTTACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATATATCTTACCACTTATTAGTTAATGGAATAGCCAACCACAAAAGCTTCAATGATTTGCCATATAACTTTCGCAATAAGTACTCCTCAGCTATTGCG AAAGCAATCCG AATGAAACGAGGTATTTGGCAAGAAGACTATAAAGTTTGGAAATTTTGTAAATTTTTCCAGAAGATAAAACGACTCGTGAACTTATAAAACTTGCAATCTAGTCATGTTAATATATAGTT] consensusID : consensus_5805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [GAGGGCGAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGTAAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAACGTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT] [+] EMBL CD083690 [GAGGGCGAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATTAATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGTAAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCGATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAATTCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCATATGGTAATGCTATAAAGATTTGTATTCCTGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAACGTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5805#0 GAGGACCACAGGACCGTATCCCGTCAGAGATAAGTGGCTGAAAAAACCCGAAAACATCGC 60 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 CTCTTAGCCCATAACTGTTTATGTTCGTTAAAACAATGCTACTCTAGTTATCTGCGATGC 120 consensus_5805#1 ------------------------------------------------------GAGGGC 6 ** consensus_5805#0 GAAG-TGCGAT-GAATAAACTTCAACAACTTATGGATGAAAATGTAGAAGCTATAAGATT 178 consensus_5805#1 GAAGCTGCGATTGAATAAACTTCAACAGCTTATGGATGAAAATGTAGAAGCTATAAGATT 66 **** ****** *************** ******************************** consensus_5805#0 AATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATC-- 236 consensus_5805#1 AATGCCTACAACGTTCTTGGTAATTGGAGTATATCTTCTCGGGAGACATTTTTATATCGT 126 ********************************************************** consensus_5805#0 ---------------------------------TTTACCAAATTCAATTCCATATATTCG 263 consensus_5805#1 AAATAAAGATGGTTTATGCGTATATTCATTCAGTTTACCAAATTCAATTCCATATATTCG 186 *************************** consensus_5805#0 ATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAAT 323 consensus_5805#1 ATTCCATCTGGTGTATACAGCCGCCAGATACATCTAAAAGGTTTGGTTAAATCTATCAAT 246 ************************************************************ consensus_5805#0 TCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCA 383 consensus_5805#1 TCTACCGGCGAATTGGAGGTTTTCCATGTGCCCAAGGTTAAACTACCTTTCCAAGTTTCA 306 ************************************************************ consensus_5805#0 TATGGTACGTTGTTCTCTAAAGGATTACATTACAGGTAATGCTATAAAGATTTGTATTCC 443 consensus_5805#1 TATG-------------------------------GTAATGCTATAAAGATTTGTATTCC 335 **** ************************* consensus_5805#0 TGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAG-GTGAAC 502 consensus_5805#1 TGTGCAGCATTCTGGACAAAGTATACAATGGTTACAGCAAAATATACACCCAGTGTGAAC 395 ***************************************************** ****** consensus_5805#0 GTGTCGTTTTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCATAATTT 562 consensus_5805#1 GTGTCGTTCTCATCCCTGTAAAACCAATTTTTGAGGATTCGGAACTATTGGCCAT----- 450 ******** ********************************************** consensus_5805#0 ACAAACGAGTAACTTACTATTCTTGTATATAGTTGCAGTGTTGTGTTTTTAAAAAAGATA 622 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 TATCTTACCACTTATTAGTTAATGGAATAGCCAACCACANAAGCTTCAATGATTTGCCAT 682 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 ATAACTTTCGCAATAAGTACTCCTCAGCTATTGCGAAAAGCATCCGAAATGAACGAGGTA 742 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 TTTGGCAGAAAGACTATAAGTTGGGAAATTTTGTAATNTTTCAGAAGATAAACGACTCGT 802 consensus_5805#1 ------------------------------------------------------------ consensus_5805#0 GACTTATAAACTGCATCTAGCATGTATATATAGTT 837 consensus_5805#1 ----------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||