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Schistosoma mansoni
cluster # 5807 cluster # 5807       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5807#0 length = 698 sequences # 2  
consensus_5807#1 length = 497 sequences # 1  

consensusID : consensus_5807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 698
fasta sequence
                              [ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA]

[+] EMBL CD127766             [ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAG                                                                                                                                  ]
[+] EMBL CD147606             [                                                                                                                                                                                                                                                                                                                                                                                                                                      ACCCCCGATTCTCCCCACACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAGAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA]


>consensus_5807#0 ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCC AAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCT GCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTT CGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATA GGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCA AAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAAT AAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGAC GAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGA TCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTT ACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGA AATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGA AGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA



consensusID : consensus_5807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence
                              [AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC]

[-] EMBL AI390084             [AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC]


>consensus_5807#1 AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGC AGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCT ACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTC TTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCC CATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAAT GTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATC CAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAA ATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCA AACAGTAATATATTCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5807#0      ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCC 60
consensus_5807#1      ------------------------------------------------------------
                                                                                  

consensus_5807#0      AAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCT 120
consensus_5807#1      ---------AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTT 51
                                 ** * * *  *  **      ******  **  *  ****  *** * *

consensus_5807#0      GCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTT 180
consensus_5807#1      GGTGAAGGCAGGGGGAAAA-----AAACACTATTTGG-----ACATTTTGTCCGCGGTGT 101
                      *  *   ** **  ** *      * **  *  * **       ***    * *   * *

consensus_5807#0      CGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATA-ATCCAT 239
consensus_5807#1      CCTGGAATTG--TGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGT 159
                      *  * ** **    ***** * *      * *  ***   **** * *  *** * *  *

consensus_5807#0      AGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATC 299
consensus_5807#1      CACAATAT---TATCGAAAAGTTCTTCTATAGTGGCACCACAA--AACGGGACGCATCCT 214
                         *****    ***   *   * *** * *          **  * * * ****     

consensus_5807#0      AAAATACGAAGTGTCTTCATCATG-TTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCA 358
consensus_5807#1      ACGA---GAAATTCGTATAACATAATTCCCATTGAC---CACCAATCCACTGGTTTACCA 268
                      *  *   *** *   *  * ***  ***   ****    **  * **   *  * *  **

consensus_5807#0      ATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTC-----TTTAAC 413
consensus_5807#1      T--AACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTT 326
                         *    *  * *   *   *  * *** **  * *   *   *** *      **   

consensus_5807#0      TTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGT 473
consensus_5807#1      TATCACGAAACATTTTACAGTCCTTTTCTAAATCCAA--ATTTTTTTCATATAAATTAGT 384
                      *       ***     * *****       **    *  ** *   ***   *   ****

consensus_5807#0      TATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGG 533
consensus_5807#1      AGCTAAATTCAT------TAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTAT--G 436
                         ** ** **       *     ** *    *   * *    ****   * *  **  *

consensus_5807#0      TGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCC 593
consensus_5807#1      TGACCTTCATGTGTTATTAGCAAACAGTAGTACA-TAATACTCCAAACAGTAATATATTC 495
                      **   **    * ****    **    *  ** * *   **  ****  *  *   ** *

consensus_5807#0      TACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACC 653
consensus_5807#1      -AC--------------------------------------------------------- 497
                       **                                                         

consensus_5807#0      CTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA 698
consensus_5807#1      ---------------------------------------------
                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)