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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence
[ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA]
[+] EMBL CD127766 [ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAG ]
[+] EMBL CD147606 [ ACCCCCGATTCTCCCCACACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAGAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA]
consensusID : consensus_5807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC]
[-] EMBL AI390084 [AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5807#0 ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCC 60
consensus_5807#1 ------------------------------------------------------------
consensus_5807#0 AAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCT 120
consensus_5807#1 ---------AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTT 51
** * * * * ** ****** ** * **** *** * *
consensus_5807#0 GCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTT 180
consensus_5807#1 GGTGAAGGCAGGGGGAAAA-----AAACACTATTTGG-----ACATTTTGTCCGCGGTGT 101
* * ** ** ** * * ** * * ** *** * * * *
consensus_5807#0 CGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATA-ATCCAT 239
consensus_5807#1 CCTGGAATTG--TGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGT 159
* * ** ** ***** * * * * *** **** * * *** * * *
consensus_5807#0 AGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATC 299
consensus_5807#1 CACAATAT---TATCGAAAAGTTCTTCTATAGTGGCACCACAA--AACGGGACGCATCCT 214
***** *** * * *** * * ** * * * ****
consensus_5807#0 AAAATACGAAGTGTCTTCATCATG-TTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCA 358
consensus_5807#1 ACGA---GAAATTCGTATAACATAATTCCCATTGAC---CACCAATCCACTGGTTTACCA 268
* * *** * * * *** *** **** ** * ** * * * **
consensus_5807#0 ATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTC-----TTTAAC 413
consensus_5807#1 T--AACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTT 326
* * * * * * * *** ** * * * *** * **
consensus_5807#0 TTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGT 473
consensus_5807#1 TATCACGAAACATTTTACAGTCCTTTTCTAAATCCAA--ATTTTTTTCATATAAATTAGT 384
* *** * ***** ** * ** * *** * ****
consensus_5807#0 TATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGG 533
consensus_5807#1 AGCTAAATTCAT------TAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTAT--G 436
** ** ** * ** * * * * **** * * ** *
consensus_5807#0 TGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCC 593
consensus_5807#1 TGACCTTCATGTGTTATTAGCAAACAGTAGTACA-TAATACTCCAAACAGTAATATATTC 495
** ** * **** ** * ** * * ** **** * * ** *
consensus_5807#0 TACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACC 653
consensus_5807#1 -AC--------------------------------------------------------- 497
**
consensus_5807#0 CTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA 698
consensus_5807#1 ---------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||