These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 698 fasta sequence [ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA] [+] EMBL CD127766 [ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCCAAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCTGCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTTCGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATAATCCATAGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATCAAAATACGAAGTGTCTTCATCATGTTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCAATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTCTTTAACTTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAAAGTTCTTCTATAG ] [+] EMBL CD147606 [ ACCCCCGATTCTCCCCACACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGTTATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGGTGCTGTTACAATATTATCGAAGAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA] consensusID : consensus_5807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC] [-] EMBL AI390084 [AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTTGGTGAAGGCAGGGGGAAAAAAACACTATTTGGACATTTTGTCCGCGGTGTCCTGGAATTGTGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGTCACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCCTACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTTTATCACGAAACATTTTACAGTCCTTTTCTAAATCCAAATTTTTTTCATATAAATTAGTAGCTAAATTCATTAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTATGTGACCTTCATGTGTTATTAGCAAACAGTAGTACATAATACTCCAAACAGTAATATATTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5807#0 ATGCTTCGACTTTTGGAACGAGACTTAAATGACCGAAGAAACAAATTATTACTATCCCCC 60 consensus_5807#1 ------------------------------------------------------------ consensus_5807#0 AAACTGTGACTACGTTTATGTTCAGCAGCTTGTTGTTTAGCACGTCCAAGACGAGAAGCT 120 consensus_5807#1 ---------AAACATGTGTAGTTCGCGAGAGCTTGTTTTACATATATAAGAAAAGATGTT 51 ** * * * * ** ****** ** * **** *** * * consensus_5807#0 GCAGGTCGCCGGATGATATTCGTTAGACTTTGATCGGCAGAAGAATTAAAGCTGAAATTT 180 consensus_5807#1 GGTGAAGGCAGGGGGAAAA-----AAACACTATTTGG-----ACATTTTGTCCGCGGTGT 101 * * ** ** ** * * ** * * ** *** * * * * consensus_5807#0 CGGGAAACTGACAAATGAGGTGCAGGGGAAGATCTATTGCTATATACAGCATA-ATCCAT 239 consensus_5807#1 CCTGGAATTG--TGATGAGCTACCTAATTACACATATATTTATAAATAATATATACCTGT 159 * * ** ** ***** * * * * *** **** * * *** * * * consensus_5807#0 AGGAATATATACATCTTCATCGTTTTCCACATCATGTTTGTAACGATCAGTACGCGGATC 299 consensus_5807#1 CACAATAT---TATCGAAAAGTTCTTCTATAGTGGCACCACAA--AACGGGACGCATCCT 214 ***** *** * * *** * * ** * * * **** consensus_5807#0 AAAATACGAAGTGTCTTCATCATG-TTCAAGTTGAGGTACAAAAGTCGCTTTTTGTCTCA 358 consensus_5807#1 ACGA---GAAATTCGTATAACATAATTCCCATTGAC---CACCAATCCACTGGTTTACCA 268 * * *** * * * *** *** **** ** * ** * * * ** consensus_5807#0 ATAAGTTTTTCCAATCTACTGCACCAGGACCAGAGAAGAATACGGTTTC-----TTTAAC 413 consensus_5807#1 T--AACCCTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAATACTTGTT 326 * * * * * * * *** ** * * * *** * ** consensus_5807#0 TTCGGACGAACCCCCGATAGTCCCAAGACGAAGTAGAGGATCTCGCTCAAGAAGCCTAGT 473 consensus_5807#1 TATCACGAAACATTTTACAGTCCTTTTCTAAATCCAA--ATTTTTTTCATATAAATTAGT 384 * *** * ***** ** * ** * *** * **** consensus_5807#0 TATTAGATCCACAGCTGGTGGGGTGACTTTCCATTCTTCTTCTTCAGGCCAATCGATTGG 533 consensus_5807#1 AGCTAAATTCAT------TAAACCGATTCGGGAGAGTCCAAAATCAGTTAACTTTAT--G 436 ** ** ** * ** * * * * **** * * ** * consensus_5807#0 TGCTGTTACAATATTATCGAAAAGTTCTTCTATAGTGGCACCACAAAACGGGACGCATCC 593 consensus_5807#1 TGACCTTCATGTGTTATTAGCAAACAGTAGTACA-TAATACTCCAAACAGTAATATATTC 495 ** ** * **** ** * ** * * ** **** * * ** * consensus_5807#0 TACGAGAAATTCGTATAACATAATTCCCATTGACCACCAATCCACTGGTTTACCATAACC 653 consensus_5807#1 -AC--------------------------------------------------------- 497 ** consensus_5807#0 CTGACGAAGAATCACTTCTGGAGCAATGTATTCTGGAGTTCCAAA 698 consensus_5807#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||