These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGGTAACAAACGCCGAACATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAGACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC] [+] EMBL CD087247 [GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTTCGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGGTAACAAACGCCGAACATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAGACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGACCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC] consensusID : consensus_581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [TTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGGTTTTCATTTTT] [+] EMBL CD188399 [TTATGCTTGATAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGTCGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCAATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGTGCAGACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGGTTTTCATTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_581#0 GTCATAAACGTCGTCCTCAATCTCCGTCTGCACACACTCCTCCTCCACAGCAGCAGTGTT 60 consensus_581#1 ------------------------------------------------------------ consensus_581#0 CGGTCCACGACTCTCCACGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCAC 120 consensus_581#1 ------------------------------------------------------------ consensus_581#0 ATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATT 180 consensus_581#1 -----------TTATGCTTGA-TAGCATTGTGCCACTACAGGAGTCTAATGAAGTTACGT 48 * *** * * * * ** * * * ***** * * * consensus_581#0 CACTTCGTCTCGCAAATGAC--GCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTC 238 consensus_581#1 CGATGCAGAGAGGAAGAGATTGGGATTCGGTAAATGAGATGAGCAGACTGTGTGACACCA 108 * * * * ** ** * * * * **** *** * * * consensus_581#0 ACAGGTAACAAACGCCGAA--CATGCATCAACGAAGCATCACTCTGCTGAACCGATTTAG 296 consensus_581#1 ATCGTGAGCTGTCTGAGGAGCTCTGCTGCTGTGGAGGAGGAGTGTGT---GCAGACGGAG 165 * * * * * * * *** * * ** * * * ** * ** ** consensus_581#0 ACCGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGATGGGCAACCTCGA 356 consensus_581#1 ATTGAGG-ACGA--CGTTTATGACCTAGTGTCGTCTCT----GCAGGTCGAGGGTTTTCA 218 * * ** * *** ** ** * * **** **** * * * * consensus_581#0 CCTGCAGAGACGACACTAGGTCATAAACGTCGTCCTCAATCTGCGTCTGCACAC 410 consensus_581#1 TTTTT------------------------------------------------- 223 * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||