These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 681 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAA-TATGTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT] [+] EMBL BF936958 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAA TATGTGAAAGTTGTCGTT ] [-] EMBL CD197753 [ AGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAATTATGTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT] consensusID : consensus_5817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence [AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCATACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAG] [+] EMBL CD075968 [AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCATACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCATACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCTAGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATTTAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATGAGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTTAGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAATAACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAGTTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCCATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAATAATATGAACCAGGAAATAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5817#0 ------------------------TACGCAGTACGG-TAATGCAGCTGCATGGCATGTTT 35 consensus_5817#1 AGAATAATAACATTAAATCTTTATTAGGCCATACAAATATTGCATAAACAAAGGTTTTCA 60 ** ** *** ** **** ** * * * consensus_5817#0 TTTT---------TTTTTTTTTTTTTTTTTTTGTAATACTAAAGCATATATTTAAGGCAT 86 consensus_5817#1 TACTAAAACGGAATGAGAATAAAGATCTGTTTGTAATACTAAAGCATATATTTAAGGCAT 120 * * * * * * ******************************* consensus_5817#0 ACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCT 146 consensus_5817#1 ACAGGCGCAGTCTTAATTATTACATCATGCACTACACACAGAAAAAAATAGTTTCTTTCT 180 ************************************************************ consensus_5817#0 AGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATT 206 consensus_5817#1 AGAAAAAACAAATCAAAATTCATGAAAGCAACATAAATACACTAAATCTTTTTAACTATT 240 ************************************************************ consensus_5817#0 TAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATG 266 consensus_5817#1 TAAGTAAAAACGAAATTGAGAAGAAAAGCGAAGAACACGCTGTAGCTCAACAAAGAAATG 300 ************************************************************ consensus_5817#0 AGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTT 326 consensus_5817#1 AGTGAAAGAAAAAAAAGAAACTGGTAAATTGTTTCCTATTTCTTCAATTTTCATTCTTTT 360 ************************************************************ consensus_5817#0 AGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAAT 386 consensus_5817#1 AGAATACAACAACGAAAAGATATCATTGACAAGTTATGATTGATGTTCCAACAAAAGAAT 420 ************************************************************ consensus_5817#0 AACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAG 446 consensus_5817#1 AACCCACAAAGAATTGTGCTAATTACATTTCACTTTAATTAAACATGCACATGGTAAGAG 480 ************************************************************ consensus_5817#0 TTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCC 506 consensus_5817#1 TTCAACTGCAATAATCACTGTTTCATTTAGGTCTATTGTATTTTTCTTTACGATAAATCC 540 ************************************************************ consensus_5817#0 ATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAA 566 consensus_5817#1 ATTTATCATTCTGATAATTTTCCATAAAATCTACGATAACGATCATCTACATTCTTTAAA 600 ************************************************************ consensus_5817#0 TAATATGAACCAGGAAATAGTCCTTCAGGTCGAAATGTTGGTTCAAATGGAGCTGAATAT 626 consensus_5817#1 TAATATGAACCAGGAAATAG---------------------------------------- 620 ******************** consensus_5817#0 GTGAAAGTTGTCGTTCTTTAAGCATTAGTTCAAATTGAGAAACAGTCACTTGAGT 681 consensus_5817#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||