These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5823#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 973 fasta sequence [GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTCAGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACTTTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCGTCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTTCAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGACACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTCCGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGCACTTAAGCTTTATTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATAGGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAATTTGAATCCACCATTACTTGTTATTGTGTACTGTTTAGAATGTTTTTCATTGATTTCCTTAGAACTCATTATTGTTAATACCACTTGAATGTAAATTCATGATTTTTAATTGATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGTACTATAAAATAACAAGCGAAT] [+] EMBL CD080453 [GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTCAGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACTTTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCGTCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTTCAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGACACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTCCGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGC ] [-] EMBL CD074365 [ GGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCTTCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTTGTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGACTCAAAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAATACATGAACTGGAGATACGATGACATTCAAATGGTTTTTATATGGTGCACTTAAGCTTTATTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATAGGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAATTTGAATCCACCATTACTTGTTATTGTGTACTGTTTAGAATGTTTTTCATTGATTTCCTTAGAACTCATTATTGTTAATACCACTTGAATGTAAATTCATGATTTTTAATTGATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGTACTATAAAATAACAAGCGAAT] consensusID : consensus_5823#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [TATTTCTTCATCAGAAGTAAAATCTTGTTTTGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTATTTCTAGAGAGGAAAGTAGAGAATAAATAATGCAGAACCTAGAGGTAAGATTTCAATTAAGGCAGTAAAGTAATAATAATTTATGGTCGACTAAATTATTCTAAAGCAACTTGTTAGTTTTGGACGTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTCTTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTGATTTTCCATCAT] [+] EMBL CD144219 [TATTTCTTCATCAGAAGTAAAATCTTGTTTTGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTATTTCTAGAGAGGAAAGTAGAGAATAAATAATGCAGAACCTAGAGGTAAGATTTCAATTAAGGCAGTAAAGTAATAATAATTTATGGTCGACTAAATTATTCTAAAGCAACTTGTTAGTTTTGGACGTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTCTTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTGATTTTCCATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5823#0 GAGGCCAGAATTCGGCACGAGGGCAATGACGATGCAACGTTGCGGGATAAGTATCAATTC 60 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 AGAGTCTCTGGTACTGATCTATGAACGAGGCCTTAAAACGAGAAAAAGAAGAATTAGACT 120 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 TTCTATGCCTCAAAATTCATCAGTCATTGAAACATATAAGGCATTGCTAGCGGATGATCG 180 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 TCATAAACAGTTCATAAATCTTATTCCTAAGACACAGCTTTTAAGATTATTGACTATCTT 240 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 CAAAGATTTGTGTAACGGGATGAATATCTCAGATTCTTTAAACAGACGAAAAGAGGTGGA 300 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 CACTAACAATGTTGATTATAGTGCCTTGGAAGGAAATAAGACTGCTATGAATAATTTGTC 360 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 CGGACGAAATGAAATGCTGCCTACAAAACAAGATTTTACTTCTGATGAAGAAATAGACCT 420 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 TCCTGAGGAACAAATTGAAACATACTCATGGGATTCTGATGAATGCGAATTTTAAACGTT 480 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 GTGTGTTTTATATGGTTATGTTTAATGGGAATAACTGTATATAATTAATGTTGTTTATGA 540 consensus_5823#1 ------------------------------------------------------------ consensus_5823#0 CTCANAAAAACGTGGAAAATGTTTAATTGCTATGTCTAGATTCAGTATTGTACTCCTGAA 600 consensus_5823#1 ------------------------------TATTTCTTCAT-CAGAAGTAAAATCTTGTT 29 *** *** ** *** * * * ** ** consensus_5823#0 TACATGAACTGGAGATACGATGACATTCANATGGTTNTTATATGGTGCACTTAAGCTTTA 660 consensus_5823#1 T---TGTAGGCAGCATTTCATTTCGTCCGGACAAATTATTCATAGCAGTCTTA---TTTC 83 * ** * ** ** * * * * * * ** * **** *** consensus_5823#0 TTCGTAAGATAATTTTGATTAAAAATATCCAAGAAAATTTACGACAGAAATGGTCAAATA 720 consensus_5823#1 TAGAGAGGAAAGTAGAGAATAAATA-ATGCA---GAACCTAGAGGTAAGAT--TTCAATT 137 * * ** * * ** **** * ** ** ** ** * ** * *** consensus_5823#0 GGGAAAATAAAATACTCATCAGTAATATATCAAATTCATTGATCATTCGCCAATTATTAA 780 consensus_5823#1 AAGGCAGTAAAGTAATAATAATTTATG-GTCGACTAAATTATTCTAAAGCAACTTGTTAG 196 * * **** ** * ** * * ** ** * * *** ** ** * ** *** consensus_5823#0 TTTGAATCCACCATTACTT-GTTATTGTGTA-CTGTTTAGAATGTTTTTCA-TTGATTTC 837 consensus_5823#1 TTTTGGAC-GTTACTACTAAGTCAGTGGACAGTTATTTTAAATATCTCACAGTTTCAGTC 255 *** * * **** ** * ** * * *** *** * * ** ** ** consensus_5823#0 CTTAGAACTCATTATTGTTAA---TACCACTTGAATGTAAAT--TCATGATTTTTAATTG 892 consensus_5823#1 TTTAAAATTTATGGATATGAAATATGGCCATTAAGAGTAAAGGATATTCATAGGTTACTG 315 *** ** * ** * * ** * * ** * ***** * * ** * * ** consensus_5823#0 ATTTTCTGCCTTATTAAATAATTTTGTATGAATGTACTTTTCTGATAACAAATACAAAGT 952 consensus_5823#1 ATTTTCCATCAT------------------------------------------------ 327 ****** * * consensus_5823#0 ACTATAAAATAACAAGCGAAT 973 consensus_5823#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||