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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5835#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 875 fasta sequence
[NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACATACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCTTGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCGATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGTATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCCATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATCAAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTTATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGTGAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCGAACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACAATCATTTTGTGCTNTTTTCATATGCTCATGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAACAAATCGGTATATGAATGAGTATTCATCACAATATGGATGGGATATCTAGACTTCTATCATAGATTTCTATCTAATTACGTTTTATTTGGAAGAAAATACTCTAGGGGTTACATTCTTGNATCAAAAACCATGATATTACTTTTTTGAAAAGGGGGATTGGATTA]
[+] EMBL CD083164 [NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACATACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCTTGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCGATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGTATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCCATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATCAAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTTATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGTGAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCGAACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACAATCATTTTGTGCTNTTTTCATATGCTCATGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAACAAATCGGTATATGAATGAGTATTCATCACAATATGGATGGGATATCTAGACTTCTATCATAGATTTCTATCTAATTACGTTTTATTTGGAAGAAAATACTCTAGGGGTTACATTCTTGNATCAAAAACCATGATATTACTTTTTTGAAAAGGGGGATTGGATTA]
consensusID : consensus_5835#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[ATTTCACTTTAATTCCCATGTCACCAAATTTTGTGAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCGACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCATGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCGGGTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCTTAGTCCTTTCTATCATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTTCCATTCTTTGTATCCAATAATCTATGTATTATTTACTTTTCCCGCAACCCCCTGGTATTTGAAATAGACGA]
[-] EMBL CD076737 [ATTTCACTTTAATTCCCATGTCACCAAATTTTGTGAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCGACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTTTGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCATGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCGGGTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCTTAGTCCTTTCTATCATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTTCCATTCTTTGTATCCAATAATCTATGTATTATTTACTTTTCCCGCAACCCCCTGGTATTTGAAATAGACGA]
consensusID : consensus_5835#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GAAGACATCAAGTGATATCGAAATTTCAATTCCTCTTGCTTCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATGACCAAAATTAAGAAACTGATAAATCAATAGAAATTCCGAGTCATATCCTTATATGGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCGGGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATCATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTTTAACTTCCTTGTATACAATATCCAGGATTATTACCTTTTTTGGAAATATGGGAATTTGAATAAGA]
[+] EMBL SMAA17945 [GAAGACATCAAGTGATATCGAAATTTCAATTCCTCTTGCTTCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATGACCAAAATTAAGAAACTGATAAATCAATAGAAATTCCGAGTCATATCCTTATATGGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCGGGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATCATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTTTAACTTCCTTGTATACAATATCCAGGATTATTACCTTTTTTGGAAATATGGGAATTTGAATAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5835#0 NATTCGGCACGAGGACATACGATTAATTCATTGTATTTCGTTGCTTTCTCTTTTGGTACA 60
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 TACACTCTAATGTGTTTAAAAGTCTAAAACAAATCAGATAGTGAAAATACAATTGAAGCT 120
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 TGACCAGAGAAATTAACCTCATTATAAAAAGTCGAAAGCTATAGTTACCAGCGACTTTCG 180
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 ATTTTTAGAAAACACTGGTATTGGGAATCCTTTGAGCGCATTAACTGATCATGTTGATGT 240
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 ATAAAATCTAATGGGGATTATTAGCAGCACGAGTTCGTTAATGTATTAGAAGTATCTTCC 300
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 ATCCCCTTAACGGATATCTGTAACAACCTTTAAAATATCTTCGCGGGCATTTCTTGTATC 360
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 AAAATCTCAATGCGTAACATGACATAGAATCATTCGAAATGATGACAATGTTCCTGTCTT 420
consensus_5835#1 ------------------------------------------------------------
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 ATTAATTCATATATATACACCTTTGTATTTCACTTTAATTACCATGTCACCAAATTTTGT 480
consensus_5835#1 --------------------------ATTTCACTTTAATTCCCATGTCACCAAATTTTGT 34
consensus_5835#2 ------------------------------------------------------------
consensus_5835#0 GAATACTACATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAAACCATAACTAATCG 540
consensus_5835#1 GAATACTCCATTCCTTAGTTTTGAAACTTGTAATTCAAAATTTCAACCCATAACTAATCG 94
consensus_5835#2 -----------------------------------GAAGACATCAAGTGATATCGAAAT- 24
** * **** *** * **
consensus_5835#0 AACCGCTAGATATGGTTGACAAATAGTTNTATGTGAAGTAAGTTTCTATCACTTTTTCTT 600
consensus_5835#1 ACCCGCTAGATATGGTTGCCAAATAGTTTTATGTGAAGTAAGTTTCTATCACTTTTTCTT 154
consensus_5835#2 -TTCAATTCCTCTTGCT-TCAGTTTCTTTAATTGGTGATTGGATTTCAAGACGAATTATG 82
* * * * * * ** * ** ** * * * ** * ** ** *
consensus_5835#0 TGCTAACTCACTATCTTATTCGCTGTCAC-AATCATTTTGTGCTNTTTTCA-TATGCTCA 658
consensus_5835#1 TGCTAACTCACTATCTTATTCGCTGTCACCAATCATTTTGTGCTTTTTTCAATATGCTCA 214
consensus_5835#2 ACCAAAATTAAGAAACTGATAA--ATCAATAGAAATTCCGAG------TCA-TATCCTTA 133
* ** * * * * * *** * *** * * *** *** ** *
consensus_5835#0 TGTAGGTGTTCATGAATGCATGGAACTTTCGATGTTTATGGGATTCATTTAAC-AAATCG 717
consensus_5835#1 TGTAGGTGTTCATGAATGCATGGACCTTTCGATGTTTATTGGATTCATTTAACCAAATCG 274
consensus_5835#2 TAT-GGTGTTCATGAATGCATGGAACTTTCGATGTTTATTGGATTCATTTAAACAAATCG 192
* * ******************** ************** ************ ******
consensus_5835#0 G-TATATGAATGAGTATTCATCAC--AATATGGATGGGAT-ATCT-AGAC---TTCTATC 769
consensus_5835#1 G-GTACCCCCCGAGTATTCATCACCAAATATGGATTGAATTATCT-TAGTCCTTTCTATC 332
consensus_5835#2 GGTATATGAATGAGTATTCATCAACAAATATGGATTGAATTATCTTAAGTACTTTCTATC 252
* ************ ********* * ** **** *******
consensus_5835#0 ATAGATTTC--TATCTAATTA-CGTTTTA--TTTGGAAGAAAAT--ACTCTAGGGG--TT 820
consensus_5835#1 ATAGTTTTTCTTATCTAATTAACGTTTTTATTTTGGAAGAAAAATAACTCTAGGGGGTTT 392
consensus_5835#2 ATAGTTTTTCCTAACCAATTAACGTTTTTAATTTGGAAGAAAAATACCTCTAGGGGGGTT 312
**** *** ** * ***** ****** ************ ********* **
consensus_5835#0 ACA-TTCTT-GNATCAAA-AACCATGAT-ATTA----CTTTTTTGAAAAG-----GGGGA 867
consensus_5835#1 CCA-TTCTTTGTATCCAATAATCTATGT-ATTATTTACTTTTCCCGCAACCCCCTGGTAT 450
consensus_5835#2 TAACTTCCTTGTATACAATATCCAGGATTATTAC---CTTTTTTGGAAATAT--GGGAAT 367
* *** * * ** ** * * * **** ***** ** **
consensus_5835#0 TTGGATTA----- 875
consensus_5835#1 TTGAAATAGACGA 463
consensus_5835#2 TTGAATAAGA--- 377
*** * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||