cluster # 5839

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 5839 cluster # 5839 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5839#0 length = 630 sequences # 2

consensus_5839#1 length = 214 sequences # 1

consensusID : consensus_5839#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence

                              [ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCATTTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGAAGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGAACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATACATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGACCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCATCAGCAACTACCATCAATTCACCCAATT-CCATGACTACT-C--CACCGCCGTCATTTGTTCCACCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCTACAGACTATGTGAAAAAATCCAATGTATTCC]

[+] EMBL CD178383             [ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCATTTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGAAGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGAACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATACATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGACCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCATCAGCAACTACCATCAATTCACCCAATT CCATGACTACT C  CACCGCCGTCATT                                                                                                  ]
[+] EMBL CD191602             [                                                                                                                                                                                                                                                                     CCTCTTCCATAGAAAGTCAACAATCGTTTAACACTTCCGAATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCTACAACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACTGACACTATGATATCGTCTTTTTCTA CATCTAATCCAATACTGTCTACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCATTTGTTCCACCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCTACAGACTATGTGAAAAAATCCAATGTATTCC]




>consensus_5839#0
ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCAT
TTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGA
AGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGA
ACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATA
CATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCG
AATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATT
TAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGA
CCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCAT
CAGCAACTACCATCAATTCACCCAATTCCATGACTACTCCACCGCCGTCATTTGTTCCAC
CGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCTA
CAGACTATGTGAAAAAATCCAATGTATTCC

consensusID : consensus_5839#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 214
fasta sequence

                              [AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGATATCGTCTTTTTCAACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA]

[-] EMBL CD178180             [AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGATATCGTCTTTTTCAACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA]




>consensus_5839#1
AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATTTAGCGACGACAGTTGCACA
AAACTCAATTGTAACATCAATCAATTCCACCGACACTATGATATCGTCTTTTTCAACATC
TAATCCAAAACTGTAGACTCCTTACATTACAACACAACATCAGCAACTACCATCAATTCA
ACCAATTGCAATGACTACTACTACACCGCCGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5839#0      ACATACACAAACTAACAATTAGTCACTAACGCGTAAAAAAAAATCCACTTTATTATTCAT 60
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      TTGATCAATAACAATTAAAGAATATGACTGTCGAACTCTCCTCTTCATCATCATATAAGA 120
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      AGGACCATTCGTGTGTAGTAACTGATACTGTTGGAAATCAATCTGAAATTGGGAATATGA 180
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      ACGACAATGGACTCACTGTTTTGTCCATCGGTAATGATGATGATGATAATCTTGATGATA 240
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      CATCTACATCAAAACAATTGACCACTTCCATAGAAAGTCAACAATCGTTTAACACTTCCG 300
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      AATATACTGTTGAAACTGTAGAGAATTCATCAAAAGAACATATGAATATGAATGATGATT 360
consensus_5839#1      -------------------AGAGAATTCATCAAAAGAACATATGAATATGAATGATGATT 41
                                         *****************************************

consensus_5839#0      TAGCTACAACAGTTGCACAAAGCTCAATTGTAACATCAATCAATTCCACTTACACTATGA 420
consensus_5839#1      TAGCGACGACAGTTGCACAAAACTCAATTGTAACATCAATCAATTCCACCGACACTATGA 101
                      **** ** ************* ***************************  *********

consensus_5839#0      CCTCGTCCTTTTCTACCATCTAATCCAATACTGTCTACTCCCTACATTACAACACAGCAT 480
consensus_5839#1      TATCGTCTTTTTC-AACATCTAATCCAAAACTGTAGACTCCTTACATTACAACACAACAT 160
                        ***** ***** * ************ *****  ***** ************** ***

consensus_5839#0      CAGCAACTACCATCAATTCACCCAATTCCA-TGACTACTCCACCGCCGTCATTTGTTCCA 539
consensus_5839#1      CAGCAACTACCATCAATTCAACCAATTGCAATGACTACTACTACACCGCCGTCA------ 214
                      ******************** ****** ** ******** *  * *** * *        

consensus_5839#0      CCGTCCATCCCACCACCTGAAACAATTATTCGTCTAGCACATGCTTATGCATGCAGAGCT 599
consensus_5839#1      ------------------------------------------------------------
                                                                                  

consensus_5839#0      ACAGACTATGTGAAAAAATCCAATGTATTCC 630
consensus_5839#1      -------------------------------