These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCGGATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAGTAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAATGTTTGGTTGATTTTGAGTGTG] [+] EMBL CD062145 [ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCGGATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAGTTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTGTGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTCGTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGACTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCGTGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAGTAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAATGTTTGGTTGATTTTGAGTGTG] consensusID : consensus_584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [CGACCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGGTAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGTTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGCGGGTGG] [+] EMBL CD130636 [CGACCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGGTAGATGAGTGTATAGTGTGTGTGTGTGTGTTTGTGCGAGCGTGTTGATCTAGCATAAGTTATGTAGTGAATGTGTTTGCGGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_584#0 ATTTGGATGTAGTGTAGGAATTGTGTTGTATTGTGATGTTGTTGATAATGATATTTGTCG 60 consensus_584#1 ------------------------------------------------------------ consensus_584#0 GATTGCCACGATATACTATGGTTTTGTTTATTGTGTTTTTCAGATGTAAATGAAGAATGA 120 consensus_584#1 ------------------------------------------------------------ consensus_584#0 GTGAACCGTCGATATGTGGAGTTGCAATCGATGGAATGGTTTTGGTGATTTGTTGACGAG 180 consensus_584#1 ------------------------------------------------------------ consensus_584#0 TTAGAATCGATGTAAATGAAGAATGAGTGAACCGTCGATATGTGGAGTTGCAGTATATTG 240 consensus_584#1 ------------------------------------------------------------ consensus_584#0 TGTGTGTGTATTGATGGGTATGGTGATCAGGAGATAGTGAACCTATATTTTGTGCTATTC 300 consensus_584#1 ------------------------------------------------------------ consensus_584#0 GTCAGTCGTCGTCAGCAGGGCGTACTTGTGATGTCAAGAGAAGTGGAGCTTGTTGGTGGA 360 consensus_584#1 ---------------------------------------------------------CGA 3 ** consensus_584#0 CTCGATATAACTGGATAAGCAGTAAAAGGACTAGACAAACATGAGATTGGTGACTATTCG 420 consensus_584#1 CCAAACATAAACTCTTTAGAGGAAGAAGAGCAAGCCCTATGTACACTAAGGGAGTGTAGG 63 * * **** * ** * * *** * ** * * * * * ** * * * consensus_584#0 TGAGTGAGTGGTGGGTCAATAGTATGGAGATCGTTTGTTTGTCGTGAGGGAATTGGTGAG 480 consensus_584#1 TAGATGAGTG-------TATAGTGTGTGTGT-GTGTGTTTGT-GCGAGCGTGTTGATC-- 112 * ****** ***** ** * ** ******* * *** * *** * consensus_584#0 TAGTGTAGTGTTACTACTAGAGGTGTTTTTCTGCGTGCGATATAAATATGTGTATATAAT 540 consensus_584#1 TAGCATAAGTTATGTAGTGAATGTGTT----TGCGGGTGG-------------------- 148 *** ** * ** * * ***** **** * * consensus_584#0 GTTTGGTTGATTTTGAGTGTG 561 consensus_584#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||