These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 628 fasta sequence [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTAAGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAAAAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA] [+] EMBL CD152940 [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTAAGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAAAAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA] [+] EMBL CD152674 [CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTCTTAGGCATAGAAGTTGACTTTATTAACTCTGTACAGTTTTCAAATCACACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTGTATCTTGGTTTGAAAGCGAATGGCCTCAACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGAT ] consensusID : consensus_5859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTTGCGTACTACTAATCATAACCTATACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACT] [+] EMBL CD191973 [TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAAGCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCATGTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTTGCGTACTACTAATCATAACCTATACAGGCTATGATTTTGTCAAGGGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGCCTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCAGTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGATCCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAAGAAAGAATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5859#0 --------------CCGTCATAATCAGACTTAAATTATCAAAGGCTGGACGTTGTATGAA 46 consensus_5859#1 TTCCTTGAATGTGGCCGTCATAATCAGACTTAAATTATCAAGGGCTGGACGTTGTATGAA 60 *************************** ****************** consensus_5859#0 GCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCAT 106 consensus_5859#1 GCTAGGATGGCAGTTAAAGTTGCACTTAACTGTCTGAAGGTTCTCTGCATACAGAGTCAT 120 ************************************************************ consensus_5859#0 GTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTCCCCTTGCAAGTCTTAGGCATA 166 consensus_5859#1 GTTGTCCATGGATATGTTGGCAATAAAATAGCTGTTTTTCCCTTGCAAGTTT---GCGTA 177 ************************************** *********** * ** ** consensus_5859#0 GAAGTTGACTTTATTAACTCTGTACACCCCTCAAATCACACAGGCTATGATTTTGTCAAG 226 consensus_5859#1 ----------CTACTAAT-----------CATAACCTATACAGGCTATGATTTTGTCAAG 216 ** *** * ** * ********************* consensus_5859#0 GGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGC 286 consensus_5859#1 GGGCAAGTGTTGGATGCTGCGAGCATGAAAGATTTATATCTTGGTTTGAAAGCGAATGGC 276 ************************************************************ consensus_5859#0 CTCAACAAGTATACTCATGTGCTCACAAGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCA 346 consensus_5859#1 CTCGACAAGTATACTCATGTGCTCACAGGTTATCTGGCGTCGCCAAGCTCTTTGGAAGCA 336 *** *********************** ******************************** consensus_5859#0 GTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGAT 406 consensus_5859#1 GTCGCAGATATTGTATCCGACCTCAAAAAAGAGAACTCAAATTTAAAATATTACTGCGAT 396 ************************************************************ consensus_5859#0 CCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAA 466 consensus_5859#1 CCCGTTCTAGGTGATAATGGAAAGCTTTATGTCCCACCTGAACTCGTCCAGATATACCAA 456 ************************************************************ consensus_5859#0 GAAAGAATACTCCCTTTATCAGATGTCATTTTCCCAAACCAATTCGAAGCAGATATACTA 526 consensus_5859#1 GAAAGAATACT------------------------------------------------- 467 *********** consensus_5859#0 AGTGGTATACCAATAACAGATGAAAAGTCTGCTTTAAATTGTATCAACTATTTACATAAA 586 consensus_5859#1 ------------------------------------------------------------ consensus_5859#0 AAATATCATATTCCAACTGTAATTATTACAAGTACTAATATA 628 consensus_5859#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||