These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCAGGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCCACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTTC] [+] EMBL CD177780 [GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCAGGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCCACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTTC] consensusID : consensus_5868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 282 fasta sequence [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA] [+] EMBL CD181520 [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA] [+] EMBL CD181441 [GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGAGATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCCACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTAGACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTTTATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5868#0 ------------GCTTCCAGTATCACGGGGGTCCAGGGCTCGGGAGAATTTCACGTGTCA 48 consensus_5868#1 GCGATGCCGTTTGAAGCGAATAATACTGGGTTCGAGTTCCAGGGTGAATATCAACTGTGA 60 * * * ** ** *** ** ** * *** **** *** *** * consensus_5868#0 GGATGCGGATCCGTCCAACTGAGGAGTCCTAAATAGGACGACACGCGCGTCTTGGATTCC 108 consensus_5868#1 G-ATGCAGATACATCCAACTGATGAGTTCTAAATAGGACGAAACGCGCGTCTTGGATTCC 119 * **** *** * ********* **** ************* ****************** consensus_5868#0 ACTTCTAGACACTATCCGCCTTTGCTTACAAGGTCTCAATATTGTCTTCAATGGCATTTA 168 consensus_5868#1 ACTTCTAGTCACTATCCGTCTTTGCTTACAAGGTCTTAATATTGTCTTCAATGGCATTTA 179 ******** ********* ***************** *********************** consensus_5868#0 GACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTT 228 consensus_5868#1 GACGATGAAACATTATGTGACTTATTTATTAAGTACTTAGTTGAAAGATAAGGATCCTTT 239 ************************************************************ consensus_5868#0 TATTAATGATTGCTAATAATATCAGACTATAGAAACTAAACAATAGTTGGTAATCAGCTT 288 consensus_5868#1 TATTAATGATTGCTAATAATATCAGACTATAGAAACTANACAA----------------- 282 ************************************** **** consensus_5868#0 C 289 consensus_5868#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||