These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence [AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTATTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGATTTT] [+] EMBL CD081688 [AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTATTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTA ] [-] EMBL CD074615 [ CATACAAAGGACTNTCATACC TCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGATTCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCATTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGTGAACCGAATATGTTTAAACAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATGGCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTAAACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAAATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAACCAATCTATGACCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTCGCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTAGGACTTTATGATTCTGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGATTTT] consensusID : consensus_5879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTATTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTT] [+] EMBL CD080691 [GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTATTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGTGCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACACCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTGTCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAATGTGGAAATACAGGAAATTTCGTTGTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5879#0 AGCCATAATTCGGCACGACGGCCTAAATATGAGGATAATTTAGCATGTATAAAAGAATTA 60 consensus_5879#1 ----GAAATAAAGAAGATTATCCTAAATATGAGAATAATTTAGCATGTATAAAAGAATTA 56 *** * * ************ ************************** consensus_5879#0 TTCCCTCCAAGTAATAATTATTTAGTTGGTTATCATCCACATGGAATATTTGGTATTGGT 120 consensus_5879#1 TTCCCTGCAAGTAATAATTATTTAGTTGGTTATCATTCACATGGAATATTTGGTATTGGT 116 ****** ***************************** *********************** consensus_5879#0 GCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACA 180 consensus_5879#1 GCTTTTATTAATTTCTTAACGGAAGCTAATCAATTCTCCGAAAAATTTCCAGGAATTACA 176 ************************************************************ consensus_5879#0 CCATGGTTAACAACATTGGAAATTAATTTTAAAGCACCATTTTATCGTGATCTCCTTTTG 240 consensus_5879#1 CCATGGTTAACAACATTGGAAATTAATTNTAAAGCACCATTTTATCGTGATCTCCTTTTG 236 **************************** ******************************* consensus_5879#0 TCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAA 300 consensus_5879#1 TCTTTTAATCTTGTAGCGGCAACATACAAAGGACTTTCATACCTTCTTGATCCTCAACAA 296 ************************************************************ consensus_5879#0 TGTGGAAATACAGGAAATTTCGTTGTCGTTCTTTTGGGTGGTGCTCCTGAAGCATTAGAT 360 consensus_5879#1 TGTGGAAATACAGGAAATTTCGTTGTCGTT------------------------------ 326 ****************************** consensus_5879#0 TCACGTCCTGGAAAATATGTCTTCCACACTAATCGACGATACGGCTTTTTCAAGTTAGCA 420 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 TTAATGACTGGGTCGCACTTAGTACCGTGTGTATCGTTTGGCGAACCGAATATGTTTAAA 480 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 CAAGTGTACAATCCTGAAGGGAGTTGCATACGATACTTCCAAAATCGATTTACGGAAATG 540 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 GCAACATTCTCACCTCCTTTCTTTTATGCTCGATTTTTACTGCCTTATCGGACAGATGTA 600 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 AACACAGTCATTGGACGGCCAATACCATGTGAAAAAAACCCAAATCCAACAAGAGAACAA 660 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 ATATCAGTGCTGAAAGAATTATACCTAGAAGAACTTCGAAATCTTTACAATAAATACAAA 720 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 CCAATCTATGATCCAGATGGAGATCTAATGTTTGTTTGAAGCTGAGATAATCTTGTTTTC 780 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 GCAGTTTATTCTATTAGCCAGAAAAAACAATAAACATTACCATCTANGACTNTATGATTC 840 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 TGATTATTTTATTTATGACAATTATTTCTCAGTTTCAAGATGTACATTCATTTGAAAAGA 900 consensus_5879#1 ------------------------------------------------------------ consensus_5879#0 TTTT 904 consensus_5879#1 ---- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||