These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 605 fasta sequence [CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAATGATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGAATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTATTATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTTCATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTACGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACATTTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCTTCAGGAGCAGCTCCTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT] [+] EMBL CD155672 [CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAATGATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGAATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTATTATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTTCATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTACGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACATTTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCTTCAGGAGCAGCTCCT ] [-] EMBL CD152517 [ tTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCGTTATCCTCCTTCAGGAGCAGCTCGTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT] consensusID : consensus_5883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [CACACGAACACGATCTCNTAAAGCTGGATTAATGATGAATAGTTGAGTGTCAATAGCTGCAGCTAAAAGATGTAATTCCGGATTAGGATTCCATGAGACACTAGCGGAAGGAGAAGATGGAGACCAGTTTTCTTCATCGTCACTCGGTTGATGATCTATTTCCTCTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT] [-] EMBL CD201690 [CACACGAACACGATCTCNTAAAGCTGGATTAATGATGAATAGTTGAGTGTCAATAGCTGCAGCTAAAAGATGTAATTCCGGATTAGGATTCCATGAGACACTAGCGGAAGGAGAAGATGGAGACCAGTTTTCTTCATCGTCACTCGGTTGATGATCTATTTCCTCTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5883#0 CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAAT 60 consensus_5883#1 ------------------------------------------------------------ consensus_5883#0 GATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGA 120 consensus_5883#1 ------------------------------------------------------------ consensus_5883#0 ATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTAT 180 consensus_5883#1 ------------------------------------------------------------ consensus_5883#0 TATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTT 240 consensus_5883#1 ------------------------------------------------------------ consensus_5883#0 CATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTA 300 consensus_5883#1 ------------------CACACGAACA--CGATCTCNTAA-AGCTGGATTAATGATGAA 39 ** * ** * * ** *** * * ** * ** * consensus_5883#0 CGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACAT 360 consensus_5883#1 TAGT-TGAGTGTCAATAGC----TGCAGCTAAAAGATGTAATTCCG------GATTAGGA 88 * * * ***** * * * **** ** **** * ** * consensus_5883#0 TTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCT 420 consensus_5883#1 TTCCATGAGACACTAGCGGAAGGAG---AAGATG------GAGACCAGTTTTCTTCATCG 139 *** * **** * * ** ** ** * * ** ** * * * consensus_5883#0 TCAGGAGCAGCTCCTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATT 480 consensus_5883#1 TCAC--TCGGTTGATGATCTATTTCCTC---TTCATCATTATCATTATTGTTATTCAATT 194 *** * * * ** ** ***** ***************************** consensus_5883#0 GTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTT 540 consensus_5883#1 GTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTT 254 ************************************************************ consensus_5883#0 TTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATA 600 consensus_5883#1 TTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATA 314 ************************************************************ consensus_5883#0 TGCGT 605 consensus_5883#1 TGCGT 319 ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||