cluster # 5883

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Schistosoma mansoni
cluster # 5883 cluster # 5883 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5883#0 length = 605 sequences # 2

consensus_5883#1 length = 319 sequences # 1

consensusID : consensus_5883#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 605
fasta sequence

                              [CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAATGATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGAATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTATTATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTTCATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTACGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACATTTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCTTCAGGAGCAGCTCCTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT]

[+] EMBL CD155672             [CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAATGATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGAATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTATTATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTTCATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTACGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACATTTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCTTCAGGAGCAGCTCCT                                                                                                                                                                          ]
[-] EMBL CD152517             [                                                                                                                                                                                                                                                                                                                                                                          tTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCGTTATCCTCCTTCAGGAGCAGCTCGTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT]




>consensus_5883#0
CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAAT
GATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGA
ATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTAT
TATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTT
CATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTA
CGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACAT
TTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCT
TCAGGAGCAGCTCCTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATT
GTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTT
TTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATA
TGCGT

consensusID : consensus_5883#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [CACACGAACACGATCTCNTAAAGCTGGATTAATGATGAATAGTTGAGTGTCAATAGCTGCAGCTAAAAGATGTAATTCCGGATTAGGATTCCATGAGACACTAGCGGAAGGAGAAGATGGAGACCAGTTTTCTTCATCGTCACTCGGTTGATGATCTATTTCCTCTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT]

[-] EMBL CD201690             [CACACGAACACGATCTCNTAAAGCTGGATTAATGATGAATAGTTGAGTGTCAATAGCTGCAGCTAAAAGATGTAATTCCGGATTAGGATTCCATGAGACACTAGCGGAAGGAGAAGATGGAGACCAGTTTTCTTCATCGTCACTCGGTTGATGATCTATTTCCTCTTCATCATTATCATTATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATATGCGT]




>consensus_5883#1
CACACGAACACGATCTCNTAAAGCTGGATTAATGATGAATAGTTGAGTGTCAATAGCTGC
AGCTAAAAGATGTAATTCCGGATTAGGATTCCATGAGACACTAGCGGAAGGAGAAGATGG
AGACCAGTTTTCTTCATCGTCACTCGGTTGATGATCTATTTCCTCTTCATCATTATCATT
ATTGTTATTCAATTGTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAA
TTTAACTTTTTCTTTTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGT
AGAAGTTTCCCATATGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5883#0      CGTGCTGAAATGGGATTAGAAATGCAACGTCGTATAAGTGAATTACGTAGAATATGGAAT 60
consensus_5883#1      ------------------------------------------------------------
                                                                                  

consensus_5883#0      GATGAACTAATTGCTATTATGGAAGCAGCTAGTAGAATATGGGAATATGATGTTGTAAGA 120
consensus_5883#1      ------------------------------------------------------------
                                                                                  

consensus_5883#0      ATTGTTGATGTTGTAAAACGTCGTCAATGGTGTGCATATTGTGGACGTATAGCCTATTAT 180
consensus_5883#1      ------------------------------------------------------------
                                                                                  

consensus_5883#0      TATTGTTGTTGGAATACATCATATTGTAATAGTATTTGTCAATCAAAACATTGGCCTTTT 240
consensus_5883#1      ------------------------------------------------------------
                                                                                  

consensus_5883#0      CATATGGCTTCTTGTGTACAAGCTAAAAGTCAATTGAATAACAATAATAATAGTTCTGTA 300
consensus_5883#1      ------------------CACACGAACA--CGATCTCNTAA-AGCTGGATTAATGATGAA 39
                                        **  * ** *  * **    *** *     * ** *  ** *

consensus_5883#0      CGTCGTCATTCTCAATCACCCAATTTAACTAATTCATCTAATGTCATCGATCAATCACAT 360
consensus_5883#1      TAGT-TGAGTGTCAATAGC----TGCAGCTAAAAGATGTAATTCCG------GATTAGGA 88
                           * * * *****  *    *  * ****   ** ****  *        ** *   

consensus_5883#0      TTCTCTTTAACACAACCATCAGCGATTCAACATCTTTCACAAAATCATCCTTATCCTCCT 420
consensus_5883#1      TTCCATGAGACACTAGCGGAAGGAG---AAGATG------GAGACCAGTTTTCTTCATCG 139
                      ***  *   **** * *   **      ** **        * * **   ** * *  * 

consensus_5883#0      TCAGGAGCAGCTCCTGCTCCTCCTCCTCCACTTCATCATTATCATTATTGTTATTCAATT 480
consensus_5883#1      TCAC--TCGGTTGATGATCTATTTCCTC---TTCATCATTATCATTATTGTTATTCAATT 194
                      ***    * * *  ** **    *****   *****************************

consensus_5883#0      GTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTT 540
consensus_5883#1      GTAAATCTTCATGATTTACCTCCCTTGTTTTGTTATATTGTTTTAATTTAACTTTTTCTT 254
                      ************************************************************

consensus_5883#0      TTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATA 600
consensus_5883#1      TTGCACATGGATTACAAAGACGATAAACGCGGAAACAATAGTTTGTAGAAGTTTCCCATA 314
                      ************************************************************

consensus_5883#0      TGCGT 605
consensus_5883#1      TGCGT 319
                      *****