cluster # 5895

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Schistosoma mansoni
cluster # 5895 cluster # 5895 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5895#0 length = 398 sequences # 2

consensus_5895#1 length = 384 sequences # 1

consensusID : consensus_5895#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence

                              [AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCGTCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATGTAGTGATTTAGTATTTACCAAGCGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGGTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG]

[+] EMBL CD144125             [AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCGTCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATGTAGTGATTTAGTATTTACCAAGCGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGGTTTC                                 ]
[+] EMBL CD139725             [                                                                                                                                                      CAGTCGAAGTTTTCAATCATTCAGTACATCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGGTTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG]




>consensus_5895#0
AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCG
TCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATG
TAGTGATTTAGTATTTACCAAGCGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACATC
TGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCTTGAAGAATTACGAAGTTT
AGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAAAAACCT
TGTAGAATCAGGCTGTGAAGACGACGACACATCAGAACAAGCTATTGGTCGAGCGATTGG
GTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG

consensusID : consensus_5895#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 384
fasta sequence

                              [CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCCCACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAATGAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAAATAGTTCAAGAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAATCAGTTGTTGAAGTGAAAAACTCAGATAGTCTTAAGCATGTTAGAACAAAACAAGAGTATCCTCAACCATCAAGCTTGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCACAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC]

[+] EMBL CD094955             [CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCCCACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAATGAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAAATAGTTCAAGAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAATCAGTTGTTGAAGTGAAAAACTCAGATAGTCTTAAGCATGTTAGAACAAAACAAGAGTATCCTCAACCATCAAGCTTGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCACAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC]




>consensus_5895#1
CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCCCACGCAG
AAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAATGAATCTT
ATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAAATAGTTC
AAGAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAATCAGTTGTTG
AAGTGAAAAACTCAGATAGTCTTAAGCATGTTAGAACAAAACAAGAGTATCCTCAACCAT
CAAGCTTGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCACAATGGCAACTGAAT
CCAGTTTGCACACTCCAACAAAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5895#0      AAATTCATTCCCCGAATTGTAGTCGAAATTTTCCTCACTTCGAGATAAACTAACTACGCG 60
consensus_5895#1      -------CTCCTTTAGGACCAGTTAAGCATGGTAGATATGCTAATAGTTCTCGCGGGCCC 53
                              ***   *     ***  *   *        * * *      **  *    * 

consensus_5895#0      TCCATTGGATTGAATAACAGGGCCAAGGCGATGTTTAGCACTTATTCTACCTTCCCCATG 120
consensus_5895#1      CACGCAGAAGTAGATGGTAGTGTAAAGGCTGCAGCAGATGTATATGTTTCTGAGGATAAT 113
                        *   * * *  **   ** *  *****             ***  * *       *  

consensus_5895#0      TAGTGATTTAGTATTTACCAAG--CGTGGACCCAGTCGAAGTTTTCTATCATTCAGTACA 178
consensus_5895#1      GAATCTTATCACATTAAAGAAGAGCGCAAAATCATGTCCACTTCTTCCTTATCCCGAAAA 173
                       * *  * *   *** *  ***  **   *  **     * ** *   * ** * * * *

consensus_5895#0      TCTGTCTGGTCGAAGTATCCGACAGAACGCAAGCGACCAACTCT-TGAAGAAT-TACGA- 235
consensus_5895#1      ATAGTTCAA--GAAGGTGAAAATAATTCGGAATTATCGGATAAAATGAACAACCTACAAT 231
                         **      ****      * *   ** **    *  *     **** **  *** * 

consensus_5895#0      -AGTTTAGGAGGAGAAATCATTTGTGTGGATTTAGGTTCGGCACCAGACAACGTAATGAA 294
consensus_5895#1      CAGTTGTTGAAGTGAAAA-ACTCAGATAGTCTTAAGCATGTTA--GAACAAAACAA--GA 286
                       ****   ** * ****  * *    * *  *** *   *  *    ****   **   *

consensus_5895#0      AAACCTTGTAGAATCAGGCTGTGAAGACGACGACACATCAGAAC-AAGCTATTGGTCGAG 353
consensus_5895#1      GTATCCTCAACCATCAAGCT-TGCTGCTTAAAAGAGCTGTGAACGAAGCTAAAGCCAGCA 345
                        * * *  *  **** *** **  *   *  * *  *  **** ******  *   *  

consensus_5895#0      CGATTG-GGTTTCGTTTTGTTGGAGTGTGCAAACTGGATTCAGTTG 398
consensus_5895#1      CAATGGCAACTGAATCCAGTTTGCACACTCCAACAAAAC------- 384
                      * ** *    *   *   *** *      * ***   *