cluster # 5917

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Schistosoma mansoni
cluster # 5917 cluster # 5917 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5917#0 length = 751 sequences # 2

consensus_5917#1 length = 388 sequences # 1

consensusID : consensus_5917#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 751
fasta sequence

                              [GGAGCCTTATTCGGCACGAGGTGAAAATCCTTAAGATCTGATGAAGAAGATGATGATGATTTTCAATGTTCATGCAATGAAAATGATCTTGATTATCTTGATGTAAATTCAAAAGAATTACAATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTAGTTTAGGCTAATCTTTCATTCATTCATATGTTTACTTATTATTCATTTCATTGTGATTAAGTTATTTATCAAATTTCTTTTAAAAATATTCTGGAATGTTCTTTGATCGGTGATCTTTTTTGTCGTAGAAATTCTCTTTCATCATTTGTTATTTGAACTTTATACTCCCTACACTTGTATTATTCACTTACTACACTTTCTTTGCACTATCTTCAATGTTCAGTAATCATAGTCATATATGATCAATTTTAAAAAGTACACTTGAATGGCATTTACTCGTTATTTTGCTGGGAGGGAGGGGGATGGTTTTCGATGTAATTTTTAATTAGTAATATTTATTTCAATCATAATTTCATTCATAAACTTAGTTACTCGAGTTACTTAGTATTTGTTTTACTATTCTATACATTTTCATCATATCATCAAATAGATATATATATACATATT]

[+] EMBL CD081721             [GGAGCCTTATTCGGCACGAGGTGAAAATCCTTAAGATCTGATGAAGAAGATGATGATGATTTTCAATGTTCATGCAATGAAAATGATCTTGATTATCTTGATGTAAATTCAAAAGAATTACAATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTAGTTTAGGCTAATCTTTCATTCATTCATATGTTTACTTATTATTCATTTCATTGTGATTAAGTTATTTATCAAATTTCTTTTAAAAATATTCTGGAATGTTCTTTGATCGGTGATCTTTTTTGTCGTAGAAATTCTCTTTCATCATTTGTTATTTGAACTTTATACTCCCTACACTTGTATTATTCACTTACTACACTTTCTTTGCACTATCTTCAATGTTCAGTAATCATAGTCATATATGATCAATTTTAAAAAGTACACTTGAATGGCATTTACTCGTTATTTTGCTGGGAGGGAGGGGGATGGTTTTCGATGTAATTTTTAATTAGTAATATTTATTTCAATCATAATTTCATTCATAAACTTAGTTACTCGAGTTACTTAGTATTTGTTTTACTATTCTATACATTTTCATCATATCATCAAATAGATAT             ]
[-] EMBL CD074692             [                                                                                                                                                                                ACAGTTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTAGTTTAGGCTAATCTTTCATTCATTCATATGTTTACTTATTATTCATTTCATTGTGATTAAGTTATTTATCAAATTTCTTTTAAAAATATTCTGGAATGTTCTTTGATCGGTGATCTTTTTTGTCGTAGAAATTCTCTTTCATCATTTGTTATTTGAACTTTATACTCCCTACACTTGTATTATTCACTTACTACACTTTCTTTGCACTATCTTCAATGTTCAGTAATCATAGTCATATATGATCAATTTTAAAAAGTACACTTGAATGGCATTTACTCGTTATTTTGCTGGGAGGGAGGGGGATGGTTTTCGATGTAATTTTTAATTAGTAATATTTATTTCAATCATAATTTCATTCATAAACTTAGTTACTCGAGTTACTTAGTATTTGTTTTACTATTCTATACATTTTCATCATATCATCAAATAGATATATATATACATATT]




>consensus_5917#0
GGAGCCTTATTCGGCACGAGGTGAAAATCCTTAAGATCTGATGAAGAAGATGATGATGAT
TTTCAATGTTCATGCAATGAAAATGATCTTGATTATCTTGATGTAAATTCAAAAGAATTA
CAATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAG
TTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCA
CTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCA
TTTAGTTTAGGCTAATCTTTCATTCATTCATATGTTTACTTATTATTCATTTCATTGTGA
TTAAGTTATTTATCAAATTTCTTTTAAAAATATTCTGGAATGTTCTTTGATCGGTGATCT
TTTTTGTCGTAGAAATTCTCTTTCATCATTTGTTATTTGAACTTTATACTCCCTACACTT
GTATTATTCACTTACTACACTTTCTTTGCACTATCTTCAATGTTCAGTAATCATAGTCAT
ATATGATCAATTTTAAAAAGTACACTTGAATGGCATTTACTCGTTATTTTGCTGGGAGGG
AGGGGGATGGTTTTCGATGTAATTTTTAATTAGTAATATTTATTTCAATCATAATTTCAT
TCATAAACTTAGTTACTCGAGTTACTTAGTATTTGTTTTACTATTCTATACATTTTCATC
ATATCATCAAATAGATATATATATACATATT

consensusID : consensus_5917#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [ATAATAATAATAATAATAATAATAATAATCTTAAAAGTAGATCACCAATTGTATGCAATCCAACAATTCAATTCTATGAAAATCCATTAAGATCTGATGAAGAAGATGATGATGATTTTCAATGTTCATGCAGTGAAAATGATCTTGATTATCTTGATGTAAATTCAAATGAATTACAATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTAGTTTAGGCTAATCTTTCATTCATTCATA]

[+] EMBL CD140826             [ATAATAATAATAATAATAATAATAATAATCTTAAAAGTAGATCACCAATTGTATGCAATCCAACAATTCAATTCTATGAAAATCCATTAAGATCTGATGAAGAAGATGATGATGATTTTCAATGTTCATGCAGTGAAAATGATCTTGATTATCTTGATGTAAATTCAAATGAATTACAATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTTCAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTAGTTTAGGCTAATCTTTCATTCATTCATA]




>consensus_5917#1
ATAATAATAATAATAATAATAATAATAATCTTAAAAGTAGATCACCAATTGTATGCAATC
CAACAATTCAATTCTATGAAAATCCATTAAGATCTGATGAAGAAGATGATGATGATTTTC
AATGTTCATGCAGTGAAAATGATCTTGATTATCTTGATGTAAATTCAAATGAATTACAAT
TAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTTCA
ATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACTCA
TTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATTTA
GTTTAGGCTAATCTTTCATTCATTCATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5917#0      ------------------------------------------------------GGAGCC 6
consensus_5917#1      ATAATAATAATAATAATAATAATAATAATCTTAAAAGTAGATCACCAATTGTATGCAATC 60
                                                                            * *  *

consensus_5917#0      TTA---TTCGGCACGAGGTGAAAATCC-TTAAGATCTGATGAAGAAGATGATGATGATTT 62
consensus_5917#1      CAACAATTCAATTCTA--TGAAAATCCATTAAGATCTGATGAAGAAGATGATGATGATTT 118
                        *   ***    * *  ********* ********************************

consensus_5917#0      TCAATGTTCATGCAATGAAAATGATCTTGATTATCTTGATGTAAATTCAAAAGAATTACA 122
consensus_5917#1      TCAATGTTCATGCAGTGAAAATGATCTTGATTATCTTGATGTAAATTCAAATGAATTACA 178
                      ************** ************************************ ********

consensus_5917#0      ATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTT 182
consensus_5917#1      ATTAAGAAAATGAATAGAATCTCAATTCATTCAAAGAAGAACTAATACAAGACAACAGTT 238
                      ************************************************************

consensus_5917#0      CAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACT 242
consensus_5917#1      CAATACAAACAAACAAACAAAAATAACCCAGTTTGGATACCTGAATTTCCTTACATCACT 298
                      ************************************************************

consensus_5917#0      CATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATT 302
consensus_5917#1      CATTTATTTCTGATATTTCTAATCATTATTAGCTATACTTTATTCTATAGTAATGGCATT 358
                      ************************************************************

consensus_5917#0      TAGTTTAGGCTAATCTTTCATTCATTCATATGTTTACTTATTATTCATTTCATTGTGATT 362
consensus_5917#1      TAGTTTAGGCTAATCTTTCATTCATTCATA------------------------------ 388
                      ******************************                              

consensus_5917#0      AAGTTATTTATCAAATTTCTTTTAAAAATATTCTGGAATGTTCTTTGATCGGTGATCTTT 422
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      TTTGTCGTAGAAATTCTCTTTCATCATTTGTTATTTGAACTTTATACTCCCTACACTTGT 482
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ATTATTCACTTACTACACTTTCTTTGCACTATCTTCAATGTTCAGTAATCATAGTCATAT 542
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ATGATCAATTTTAAAAAGTACACTTGAATGGCATTTACTCGTTATTTTGCTGGGAGGGAG 602
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      GGGGATGGTTTTCGATGTAATTTTTAATTAGTAATATTTATTTCAATCATAATTTCATTC 662
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ATAAACTTAGTTACTCGAGTTACTTAGTATTTGTTTTACTATTCTATACATTTTCATCAT 722
consensus_5917#1      ------------------------------------------------------------
                                                                                  

consensus_5917#0      ATCATCAAATAGATATATATATACATATT 751
consensus_5917#1      -----------------------------