These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAAGACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATAGAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCACCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGGCTGTCCACCTTCTT] [+] EMBL CD087482 [GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAAGACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATAGAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCACCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGGCTGTCCACCTTCTT] consensusID : consensus_5919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 314 fasta sequence [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATAGAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC] [+] EMBL CD087486 [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATAGAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC] [+] EMBL CD087483 [CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAAGACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTGCAATACTATAGAGTTGATTAATGACATACAAGCTCCCTTGAATTCTAATTCTTATAACACTCTATACTCACCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTTGGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGGCTGTCCAGTTTCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5919#0 GGTGCTCTTATGCTAAGGACCCAGTGTGGATATGATCATTTGGCTGTATGTCCCTTGAAA 60 consensus_5919#1 CCTCCTTTTATGTTAAGGACCCAATGTGTATATAATCATTTGGCTGCATGTACCTTCAAA 60 * ** ***** ********** **** **** ************ **** **** *** consensus_5919#0 GACATACACTTCACACGTCCACTTTCCCCCTCACCCACCACTGTATGCTGGGATACTATA 120 consensus_5919#1 GACATACACTCCACACCTCCACTTTCCCCCTCACCCACCACTGTATGCTACAATACTATA 120 ********** ***** ******************************** ******** consensus_5919#0 GAATTGATTGATTACATACACGCCCCCTTGACTTCTAATTCTGATAACAGTATATACTCA 180 consensus_5919#1 GAGTTGATTAATGACATATAAGCTCCCTTGAATTCTAATTCTTATATCACTCTATACTCA 180 ** ****** ** ***** * ** ******* ********** *** ** * ******** consensus_5919#0 CCATCTCCATTTGGATGCATAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT 240 consensus_5919#1 CCATCTCCATTTGGATGTTCAATGGGCTTATCCTACCTAAAGTGATCAGATAGAGTCCTT 240 ***************** **************************************** consensus_5919#0 GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCTATGTAAATTAAGGGCAGGG 300 consensus_5919#1 GGTCTCCTCTGGAGAAACAAAACACCTGGTCTAACCTTCCCATGTAAATTAAGGGCAGGG 300 **************************************** ******************* consensus_5919#0 CTGTCCACCTTCTT 314 consensus_5919#1 CTGTCCAGTTTCTC 314 ******* **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||