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Schistosoma mansoni
cluster # 5931 cluster # 5931       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5931#0 length = 587 sequences # 2  
consensus_5931#1 length = 523 sequences # 1  

consensusID : consensus_5931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence
                              [ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC-AGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG]

[+] EMBL CD094659             [ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC AGTTGAGCGGTATC                                       ]
[-] EMBL CD127570             [                                                                                                                GAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCTTCAATAATTTTAGGAGACAAATCCACCAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTC AACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG]


>consensus_5931#0 ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACA CAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATC CATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAA GCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCA AGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGG TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGT TTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT TCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGCAGTTGA GCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG



consensusID : consensus_5931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT]

[-] EMBL CD153697             [AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT]


>consensus_5931#1 AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCT GATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGA GCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCT TCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGT TGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGG TGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTC CGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATG AACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGC ATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5931#0      ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACA 60
consensus_5931#1      ------------------------------------------------------------
                                                                                  

consensus_5931#0      CAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATC 120
consensus_5931#1      ------------------------------------------------------------
                                                                                  

consensus_5931#0      CATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAA 180
consensus_5931#1      ------------------------------------------------------------
                                                                                  

consensus_5931#0      GCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCA 240
consensus_5931#1      ------------------------------------------------------------
                                                                                  

consensus_5931#0      AGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGG 300
consensus_5931#1      ---------------------AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGG 39
                                           **************************** **********

consensus_5931#0      TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 360
consensus_5931#1      TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 99
                      ************************************************************

consensus_5931#0      TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGT 420
consensus_5931#1      TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGT 159
                      *************************************************** ** *****

consensus_5931#0      TTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 480
consensus_5931#1      TTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 219
                      *************** ********************************************

consensus_5931#0      TCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGCAGTTGA 540
consensus_5931#1      TCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGA 279
                      ***********************************  ************     ******

consensus_5931#0      GCGGTATCAAAATAGGATTGGT-ACCTACTATTTGCACATNCGTTGGG------------ 587
consensus_5931#1      GCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACA 339
                      ********************** * *   **   *  * *    * *             

consensus_5931#0      ------------------------------------------------------------
consensus_5931#1      TATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGG 399
                                                                                  

consensus_5931#0      ------------------------------------------------------------
consensus_5931#1      ATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCC 459
                                                                                  

consensus_5931#0      ------------------------------------------------------------
consensus_5931#1      CATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAA 519
                                                                                  

consensus_5931#0      ----
consensus_5931#1      GTAT 523
                          




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)