These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 587 fasta sequence [ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC-AGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG] [+] EMBL CD094659 [ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACACAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGC AGTTGAGCGGTATC ] [-] EMBL CD127570 [ GAGAGATCCATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAAGCTTCAATAATTTTAGGAGACAAATCCACCAAAGGAAGAAGAAACTTGGATGCCTCTTCAAGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGTTTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTC AACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTACCTACTATTTGCACATNCGTTGGG] consensusID : consensus_5931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence [AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT] [-] EMBL CD153697 [AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGGTTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGTTCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGTTTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGATTCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGAGCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACATATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGGATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCCCATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAAGTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5931#0 ACTTTACCAACTACATCATCTGATTTTCCTCGATTGTGTAGCTGAAGAAGAAATCTCACA 60 consensus_5931#1 ------------------------------------------------------------ consensus_5931#0 CAGCACTCATGAAACCAAGGATTGTCACGTGAATTTGTAAGTTGCACACCACGAGAGATC 120 consensus_5931#1 ------------------------------------------------------------ consensus_5931#0 CATTTGAGCATGAGGAGAAATTTTCGCTTTCTTTCATAAACTTCAAACGCCAAACAATAA 180 consensus_5931#1 ------------------------------------------------------------ consensus_5931#0 GCCTCAATAATTTTAGGAGACAAATCCAACAAAGGAAGAAGAAACTTGGATGCCTCTTCA 240 consensus_5931#1 ------------------------------------------------------------ consensus_5931#0 AGTGGATCCTCAGGTCTGGCCAGTAGATTAGCATCTAGGTCATTATCTCCTATGGATGGG 300 consensus_5931#1 ---------------------AGTAGATTAGCATCTAGGTCATTATCTCATATGGATGGG 39 **************************** ********** consensus_5931#0 TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 360 consensus_5931#1 TTATCTGTATTTGCTTCTTCTGATGCAGGCTGTCTTGAACGAGCTGCTTGTTCTCGACGT 99 ************************************************************ consensus_5931#0 TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTTTCCGTTGT 420 consensus_5931#1 TCCTGTTCAGCTCGAGCCCGAGCAGCTTCCGCTTCCGCACGCTTAGCAGCTATCTGTTGT 159 *************************************************** ** ***** consensus_5931#0 TTATTTCGTAGCTTTTTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 480 consensus_5931#1 TTATTTCGTAGCTTTCTAGCTTCAGATGAAGACATACCGTCATTTTCTCCGTGGGGAGAT 219 *************** ******************************************** consensus_5931#0 TCATCAATACTGTCCAATGGTTGAGAATACAGCTGNCAGTAAATTTCAAACTGCAGTTGA 540 consensus_5931#1 TCATCAATACTGTCCAATGGTTGAGAATACAGCTGCAAGTAAATTTCAACTGCAAGTTGA 279 *********************************** ************ ****** consensus_5931#0 GCGGTATCAAAATAGGATTGGT-ACCTACTATTTGCACATNCGTTGGG------------ 587 consensus_5931#1 GCGGTATCAAAATAGGATTGGTGATCCCGTAAACGATCTTCTAATCGCAGTGTCTCAACA 339 ********************** * * ** * * * * * consensus_5931#0 ------------------------------------------------------------ consensus_5931#1 TATGATCGTAGAGTAACCTTCCGTAGACAGTAGGAATGGAAATCTAACTGATCATCAAGG 399 consensus_5931#0 ------------------------------------------------------------ consensus_5931#1 ATATTTCTGTAGTGAAAAATGAACTTCGTGACATAACTTAAGGGCATCACCAAATCTGCC 459 consensus_5931#0 ------------------------------------------------------------ consensus_5931#1 CATATCTTTGAGTGCCCTGGCATTATCTAACAGAAACCACATGCACTGCATCTCAGACAA 519 consensus_5931#0 ---- consensus_5931#1 GTAT 523 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||