cluster # 5946

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Schistosoma mansoni
cluster # 5946 cluster # 5946 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5946#0 length = 392 sequences # 2

consensus_5946#1 length = 342 sequences # 1

consensusID : consensus_5946#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 392
fasta sequence

                              [TCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAACAGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGCACACTCTTTAACGGGATATTTGTGCATGACCTTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATAAAATTTTTACACGTCAA]

[+] EMBL CD152070             [TCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAACAGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGCACACTCTTTAACGGGATA                                                                                          ]
[+] EMBL CD163605             [                                                                                                                   ACACACGGATACTATTTTGTTGTCACCAATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGGCGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGAACACTCTTTAACGGGATATTTGTGCATGACCTTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATAAAATTTTTACACGTCAA]




>consensus_5946#0
TCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTG
TATGACCTTCTTCAACAGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACA
CGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCA
ATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTA
CCATGACGTCTGAAAGCATATTTATTATCCTACATTTTATTTGCACACTCTTTAACGGGA
TATTTGTGCATGACCTTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAAC
CAAAATTCATTTATAAAATTTTTACACGTCAA

consensusID : consensus_5946#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAACAGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA]

[-] EMBL CD151974             [AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTTAAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAACAGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTTGTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGACGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAGCATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA]




>consensus_5946#1
AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTT
AAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAAC
AGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTT
GTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGA
CGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAG
CATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5946#0      --------------------------------------------TCCCAATGTTCATTTT 16
consensus_5946#1      AACATATCGCAGAACTATAGCAACCTTTCCATTTGGCGGTATGTCCCCAATGTTCATTTT 60
                                                                   ***************

consensus_5946#0      AAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCTTCAAC 76
consensus_5946#1      AAATAAATCGGCACAATGTTCATCCTGTTCAGCCAAGATTGCTGTATGACCTTCATCAAC 120
                      ****************************************************** *****

consensus_5946#0      AGCACTGTCATACGTTCCTTTAGCCTCCGCACGTGGACGACACACGGATACTATTTTGTT 136
consensus_5946#1      AGCACTGTCATACGTTTCTTTAGCCTCCGCACGCGGACGACACACGGATACTATTTTGTT 180
                      **************** **************** **************************

consensus_5946#0      GTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGA 196
consensus_5946#1      GTCACCGATTTGTGCCTCGAAATGGTAAACCGCCACACTATTCAATGGAAAAACAAACGA 240
                      ************************************************************

consensus_5946#0      CGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAG 256
consensus_5946#1      CGCCTCCAGAGCTTCCTGCAATGTGTTCTCGTACAGGAACTCTACCATGACGTCTGAAAG 300
                      ************************************************************

consensus_5946#0      CATATTTATTATCCTACATTTTATTTGCAC-ACTCTTTAACGGGATATTTGTGCATGACC 315
consensus_5946#1      CATATTTATTATCCTACATTTCACATGAACCATGCTATGCCA------------------ 342
                      ********************* *  ** ** *  ** *  *                   

consensus_5946#0      TTTGGCATACAAGGCCAAGGTGTTTATTATCCGATATGTTCCAACCAAAATTCATTTATA 375
consensus_5946#1      ------------------------------------------------------------
                                                                                  

consensus_5946#0      AAATTTTTACACGTCAA 392
consensus_5946#1      -----------------