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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5951#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 919 fasta sequence
[CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA]
[+] EMBL CD080195 [CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTTTGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAAATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAACAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAAATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATATATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAAATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCTATATACCTATACACGAATGGGAGCATTGGTTACTAACTATGGACTAATATTACGATCTCAGTACTGACTGCATATGTCTTCACATCTGATAACGTCATATCACACTATAACCATAATCAATTACATCACAATCAATATCATTGAAATGGTGTGACCTACTCAGTGAAAAAACTATATTAAGTCAAAACTNTATTGATGA]
[+] EMBL CD083971 [ ACTAAGAGTCATCTATTCCAAATAATAACAACACAAATTCATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCATTTGATATATTAACTATGg ]
consensusID : consensus_5951#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence
[ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA]
[-] EMBL CD076513 [ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAAATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCATTATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAGATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCGCTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCTATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGATCTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGACTTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATGGTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATATAATGTTTCATAGAACATTTTATTTTGTATGTATATAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5951#0 CTCGCGGCCAAAAATTCGGCACGAGGCGTGGACTAGCACTTGTATTCCGTGAACAATCTT 60
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 TGATGGCAGCAAGACAAATCCGCGAACCATGTGCAAACGAACTGGCACCACATTTGCTAA 120
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 ATATCATAATCACAAAAATGACTGATGTGACAGCAAAAAATTGTAAGCAGTTACCAGCAA 180
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 CAAATAACGCACCGATTACTTCAAGTTTCAGTAAAATATGGCCAATAGGATCTAATACAA 240
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 ATCAGCAACAACAAACTATCGACAAAGAATCATCTATTCCAAATAATAACAACACAAACT 300
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 CATCATCCCCAACATCAATACATAACAACTTAATTGTATCCACTACCGATTCAATTGATA 360
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 TATTAACTATGCATATATGTGCAATGAATTGGTTAACTAAAGAAGTAGCTAACACACCAA 420
consensus_5951#1 ------------------------------------------------------------
consensus_5951#0 ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 480
consensus_5951#1 ATTCATATGTTTATGATATAAATATTAATGTATTTCATCCTTTATCATTAATTTTACAAA 60
************************************************************
consensus_5951#0 ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 540
consensus_5951#1 ATATATCTAAAGAATTTCATTTAAAAGATCATATATTTATGATTGTTATTTGGAAAGCAT 120
************************************************************
consensus_5951#0 TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 600
consensus_5951#1 TATTATCTTGTTTGGCATCACAATTACTTGAAGCTTTAAGTCGTGTACAACAATGTTCAG 180
************************************************************
consensus_5951#0 ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 660
consensus_5951#1 ATGAAGGACGTGGTCAAATGTTATTAGATATACAAACATTAGCTGTATATGCTCAATCCG 240
************************************************************
consensus_5951#0 CTAGTAAAATACGGTCATTTCCTAAGCTGGATTATGTAATCGAATATATTCANGCATTCT 720
consensus_5951#1 CTAGTAAAATACGGTCATTTCCTAGGCTGGATTATGTAATCGAATATATTCAGGCATTCT 300
************************ *************************** *******
consensus_5951#0 ATATACCTATACACGAATGGGAGCATTGGTTA-CTAACTATGG-ACTAA-TATT-ACGAT 776
consensus_5951#1 ATATACCTATACACGAATGGGAGCATTGGTTAACTAACTATGGGACTAAATATTCACGAT 360
******************************** ********** ***** **** *****
consensus_5951#0 CTCAGT--ACTGA--CTGCAT-ATGTCTT-CAC-ATCTGATAA-CGTCA-TATCACA--- 824
consensus_5951#1 CTCAGTTAACTGGACTTGCATCATGTCTTTCACGATTTGATAAACGTCAATATCAACGAC 420
****** **** ***** ******* *** ** ****** ***** *****
consensus_5951#0 CTATAA--CCAT--AATCAA--TTACATCACAATCAATA--------TCATT--GAAATG 868
consensus_5951#1 TTATAAACCCATTAAATCAAATTTACAATACAACAAATCAAATAAATTCATTTGGAAATG 480
***** **** ****** ***** **** *** ***** ******
consensus_5951#0 GTGTG---ACC----TACTCAGT---GAAAAAACTATATTAAGTCAAAACTNTATTGATG 918
consensus_5951#1 GTTTGTTGACCACTACATCCAGTTGAAAAAAAAACTCATTATAT-AATGTTTCATAGAAC 539
** ** *** * **** ****** **** * ** * ** **
consensus_5951#0 A----------------------- 919
consensus_5951#1 ATTTTATTTTGTATGTATATAATA 563
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||