cluster # 5959

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Schistosoma mansoni
cluster # 5959 cluster # 5959 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5959#0 length = 1111 sequences # 2

consensus_5959#1 length = 349 sequences # 1

consensusID : consensus_5959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1111
fasta sequence

                              [CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGGTATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTATCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTACATTTTATGGGACAACTTCAAGCTTATTATCATGATTTACATAGTCGTAAATCAAATATTTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGAAAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCTCTTCTGTACTATGTAAAGTTTCTAGTTCAAGTAATACTACTACTCCAGGGTATGTTACTTCAAAATTATCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTACAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGATACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACCAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAACAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCATCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAAACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATGGAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTACGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACTCTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTCATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAATGTAACAATAATGACAAAATGAATAAAATTAATAA]

[+] EMBL CD080980             [CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGGTATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTATCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTACATTTTATGGGACAACTTCAAGCTTATTATCATGATTTACATAGTCGTAAATCAAATATTTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGAAAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCTCTTCTGTACTATGTAAAGTTTCTAGTTCAAGTAATACTACTACTCCAGGGTATGTTACTTCAAAATTATCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTACAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGATACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACCAATGATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD074806             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TCACATGAATCAAAAACAACTTCAATGATACCAATCAAAACTCAAAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATATAGACAAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAACAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCATCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAAACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATGGAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTACGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACTCTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTCATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAATGTAACAATAATGACAAAATGAATAAAATTAATAA]




>consensus_5959#0
CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGG
TATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTA
TCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTA
CATTTTATGGGACAACTTCAAGCTTATTATCATGATTTACATAGTCGTAAATCAAATATT
TTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGAA
AATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCTC
TTCTGTACTATGTAAAGTTTCTAGTTCAAGTAATACTACTACTCCAGGGTATGTTACTTC
AAAATTATCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTACAAA
TCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGATACC
AATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTAATAT
AGACCAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAACAGA
TTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCATCAT
GTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAAACAC
TGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATGGAAT
ACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTACGGA
AAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACTCTTT
ATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTCATTT
TGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAATGTA
ACAATAATGACAAAATGAATAAAATTAATAA

consensusID : consensus_5959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [GATCGTGAAACACCGGCTAAACAATGGACTAAAACGATACCATTATGTTTTCTTGCTTTTTCTGTAAGAATTAGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGCTTTCTTTTTAAATCTCAATAGTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCAGGATTTCACTTTAATGAATCTAATATTTAAATAATTATCTGAAGATTCAATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATATCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGTTGAAATCATGACTCCAGTACTTCCAGGCTTGCCAT]

[+] EMBL CD150674             [GATCGTGAAACACCGGCTAAACAATGGACTAAAACGATACCATTATGTTTTCTTGCTTTTTCTGTAAGAATTAGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGCTTTCTTTTTAAATCTCAATAGTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCAGGATTTCACTTTAATGAATCTAATATTTAAATAATTATCTGAAGATTCAATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATATCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGTTGAAATCATGACTCCAGTACTTCCAGGCTTGCCAT]




>consensus_5959#1
GATCGTGAAACACCGGCTAAACAATGGACTAAAACGATACCATTATGTTTTCTTGCTTTT
TCTGTAAGAATTAGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGCTTTCTTTT
TAAATCTCAATAGTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCAGGATTTCAC
TTTAATGAATCTAATATTTAAATAATTATCTGAAGATTCAATTTGTACAGCTACTGCGTT
CAAAAATTACTTGAATAACAAATTACCTTATATCAGAAGTGGGTTTTGTGGAGATTNTAG
TAATTNTATATGGTTGAAATCATGACTCCAGTACTTCCAGGCTTGCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5959#0      CCTGCTACAGATACTACAAAACAAAATCTACTCCCATCTTTCGATCGAGCAACATAATGG 60
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      TATCGTTTTAGTCCATTGTTTAGCCGGTGTTTCACGATCAGTTGCAGTTGTCATTGCCTA 120
consensus_5959#1      ------------------------------------------------GATCGTGAAACA 12
                                                                        ** *     *

consensus_5959#0      TCTTCTATACAATAATCGTGGATTAAATGTTTACAAAGCATTAGAATTTGTACAAGCTTA 180
consensus_5959#1      CCGGCTAAACAA------TGGACTAAAACGATAC----CATTATGTTTT-------CTTG 55
                       *  *** ****      **** ****    ***    *****   ***       *** 

consensus_5959#0      CATTTTATGGGACAACTTCAAGCTTATTATCATGATTT-ACATAGTCGTAAATCAAATAT 239
consensus_5959#1      CTTTTTCTGTAAGAATT---AGTTAAAAAATATAATGGGAGAAAATTGAAACTCAATAGC 112
                      * **** **  * ** *   ** * *  *  ** **   * * * * * ** ****    

consensus_5959#0      TTTCTCTGATAAATTAAATATGAAATCTAAAGATAAATTAACAAAACGTAATAGTGCAGA 299
consensus_5959#1      TTTCTTTTTAAATCTCAATA-GTATTCCTAAAATACAAGAATGAAATTAGTCAGATTTCA 171
                      ***** *   **  * **** * * **  ** *** *  **  ***      **     *

consensus_5959#0      AAATTTAACCTCGTAGTGTAAGTTTATCATCTAACTGGATTCAATCACAATCACGTTCCT 359
consensus_5959#1      GGATTTCACTTTA----ATGAATCTAATATTTAA------------ATAATTATCTGAAG 215
                        **** ** *       * * * **  ** ***            * *** *  *    

consensus_5959#0      CTTCTGTACTATGTAAAGTTTCTA-GTTCAAGTAATACTACTACTCCAGGGTATGTTACT 418
consensus_5959#1      ATTC---AATTTGTACAGCTACTGCGTTCAAAAATTACTTGAATAACAAATTACCTTATA 272
                       ***   * * **** ** * **  ******  * ****   *   **   **  ***  

consensus_5959#0      TCAAAATTA--TCTATTTATGATTTGGGGAATTCAACATGGTCTGTAAGTACAACATGTA 476
consensus_5959#1      TCAGAAGTGGGTTTTGTGGAGATTNTAGTAATTNTATATGGT-TGAAATCATGAC---TC 328
                      *** ** *   * *  *   ****   * ****  * ***** ** **  *  **   * 

consensus_5959#0      CAAATCATCAACGTTCACTTGTTCGTAAATGTTCACATGAATCANAAACAACTTCAATGA 536
consensus_5959#1      CAGTACTTCCAGGCTTGCCAT--------------------------------------- 349
                      **   * ** * * *  *                                          

consensus_5959#0      TACCAATCAAAACTCANAAGTAATTATATATATATATATTCTTCTAAAATTCATCATGTA 596
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      ATATAGACCAATGATTTTTGCACATGGAATATAACTTTTCTTGTAATCCTTAAGTTGAAA 656
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      CAGATTTTCTTATTGAATTGTACTAAATAACATCTTTTCCTCGGTTGTCTACTATGTTCA 716
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      TCATGTTCACCATCACCAGTTTGTTTTGTCTTGTTTTCTTCTTCTTCTTCTTTTCACCAA 776
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      ACACTGTAAGCAATAATGTGATTATGTAATTATTAATTTTTTTTTATATATTCACAAATG 836
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      GAATACAACAAATTTTCGTATCATTTTGTGGATACTATTTTTTTTGTATTAAATATTTTA 896
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      CGGAAAAAATTTTCGCTTTTACTGTATAAATACTACTTATTCAAATCTCTTTAATTTACT 956
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      CTTTATTTAAAGTTAAATAATTTTTTTTTAAAAAAATATTTAACTTTACAAATTTTATTC 1016
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      ATTTTGTAAAAGATTTTTTTTGTTATTTATTTTGAAAAAAAAAGTTTTTTTTAATTTTAA 1076
consensus_5959#1      ------------------------------------------------------------
                                                                                  

consensus_5959#0      TGTAACAATAATGACAAAATGAATAAAATTAATAA 1111
consensus_5959#1      -----------------------------------