These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 629 fasta sequence [GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCTGATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACAAATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACATTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAATAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGTTCATGTACTTATAAGGTTGAGTCTATCAGTTC] [+] EMBL CD065539 [GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCTGATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACAAATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACATTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTT ] [-] EMBL CD065461 [ TTATCAACAAGACCAATGGAAATAAAACACAATGATGATATTTCAGAGTTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCATCAAAAAATACTGTACTATTGGAGAAATCTCCCAAACATTTGGACTCAAATGAAACTATGTCTTTATCCAATTCGTCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTATTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAATAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGTTCATGTACTTATAAGGTTGAGTCTATCAGTTC] consensusID : consensus_5973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [GAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTTGACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCCTGTAGGAAATTGCTTCCTACAAAGTTTCGAACAGTAAACCTGGATATACTTACAAAAATGACTTCTAATAAATACTACGATTCCGATGAGATTCCAGAGTTATCACCACATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGCATGATAGAATTAGAGTTGGCTAGATTACGTATAAC] [+] EMBL CD067602 [GAGTACATATGCATGAAAAACTTTCAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTTGACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCCTGTAGGAAATTGCTTCCTACAAAGTTTCGAACAGTAAACCTGGATATACTTACAAAAATGACTTCTAATAAATACTACGATTCCGATGAGATTCCAGAGTTATCACCACATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGCATGATAGAATTAGAGTTGGCTAGATTACGTATAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5973#0 GAAATCGATAATCAATCAAAGTATCTTGACCGAGCTCAAAATACTCACCCACAAAGTTCT 60 consensus_5973#1 ------------------------------------GAGTACATATGCATGAAAAACTTT 24 * * * * *** * * consensus_5973#0 GATTCAGTGTTATTAGACAAAACTGGAAATAATTGCCAAACCAAATATCCATTGGAAACA 120 consensus_5973#1 CAGCTCGTTCAAAAAAACGAAACAGATAAAGTTTATTAAGCCAAATAGCTTACTTGTTTT 84 * ** * * ** **** * ** ** ** ******* * consensus_5973#0 AATGTAAATCAATATTATGATCAAAAACAATCAGAACAACGAACTTCTGAAGAGGGTACA 180 consensus_5973#1 GACTTTGGCGAAACCAAGACTCTGTATTCGACAGTTTAGAGAATAGCTTAAAGTTACCCC 144 * * ** * ** * *** * *** ** ** * consensus_5973#0 TTTAAACACTCTGATAACTTTGTGGATTCATTATCAACAAGACCAATGGAAATAAAACAC 240 consensus_5973#1 TGTAGGAAAT-TGCTTCCTACAAAGTTTCG--AACAGTAAACC---TGGATATACT-TAC 197 * ** * * ** * ** * *** * ** ** * **** *** ** consensus_5973#0 AATGATGATATTTCAGAGGTTCCTCTTCAAATGAATCAAATTCAGTCAAATTTATTATCA 300 consensus_5973#1 AAAAATGACTTCTAATAAATACTACG--ATTCCGATGAGATTC---CAGAGTTATCACCA 252 ** **** * * * * * * * * ** * **** ** * **** * ** consensus_5973#0 --TCAAAAAATACTGTACTATTGGAGAAATCTCCAAAACATTTGGACTCAAATGAA-ACT 357 consensus_5973#1 CATCATATGGGAGTTTATGATGAGGACCAACTTGAAAAGGACAAACCCAAAACTAATAGC 312 *** * * * ** ** * * ** **** * *** ** * consensus_5973#0 ATGTCTTTATCCAATTCGGCGGCAACTACACAAGATGTTAATATATGTCCACAAGGATTA 417 consensus_5973#1 ATGATAGAATTAGAGTTGGCTA-GATTACGTATAAC------------------------ 347 *** ** * * *** * *** * * consensus_5973#0 TTATTTATTCCTAAAACAGAAGTGAAATCACGTATACCAGGTCATGGAGTACGTATGCAT 477 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 GAAAAACTTTCAGCTCGTTCAAAAAAACGGTAATTATTCTTTATTTCTTTTTGTTTGAAA 537 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 TAAATGTCTTTTGAAGGGGTGATCAATTGGCAACTTTGAATAATCATTGATGAATTCAGT 597 consensus_5973#1 ------------------------------------------------------------ consensus_5973#0 TCATGTACTTATAAGGTTGAGTCTATCAGTTC 629 consensus_5973#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||