These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [TATTTTTAAGAGTTAAAGCTTTTGTAAGATTTTGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATATTTCATTGTTTTTACATGCTTCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCATTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTGAAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTGAGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAACTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTCTAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC] [+] EMBL CD202158 [TATTTTTAAGAGTTAAAGCTTTTGTAAGATTTTGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATATTTCATTGTTTTTACATGCTTCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCATTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTGAAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTGAGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAACTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTCTAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC] consensusID : consensus_5976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 316 fasta sequence [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG] [-] EMBL CD087246 [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG] [-] EMBL CD087240 [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTTACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5976#0 -----------------------TATTTT-TAAGAGTTAAAGCTTTTGT----AAGATTT 32 consensus_5976#1 CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAA 60 *** * ** ** * * ***** * ** ** consensus_5976#0 TGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATAT---TTCATTGTTTTTACAT 89 consensus_5976#1 AACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGT 120 ** ** ** * * * ** * * *** * * * ** ** * consensus_5976#0 GCT--TCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCA--- 144 consensus_5976#1 GATAATTGACG-AGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAA 179 * * * *** * * * * *** ** * **** * * * * consensus_5976#0 --TTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGA 202 consensus_5976#1 CCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGA 239 ** ************************************************** consensus_5976#0 GGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACG 262 consensus_5976#1 GGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACG 299 ****** ***************************************************** consensus_5976#0 ATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTG 322 consensus_5976#1 ATATTTACGCTCTTCAG------------------------------------------- 316 ***************** consensus_5976#0 AAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTG 382 consensus_5976#1 ------------------------------------------------------------ consensus_5976#0 AGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAA 442 consensus_5976#1 ------------------------------------------------------------ consensus_5976#0 CTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTC 502 consensus_5976#1 ------------------------------------------------------------ consensus_5976#0 TAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC 551 consensus_5976#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||