cluster # 5976

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Schistosoma mansoni
cluster # 5976 cluster # 5976 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5976#0 length = 551 sequences # 1

consensus_5976#1 length = 316 sequences # 2

consensusID : consensus_5976#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 551
fasta sequence

                              [TATTTTTAAGAGTTAAAGCTTTTGTAAGATTTTGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATATTTCATTGTTTTTACATGCTTCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCATTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTGAAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTGAGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAACTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTCTAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC]

[+] EMBL CD202158             [TATTTTTAAGAGTTAAAGCTTTTGTAAGATTTTGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATATTTCATTGTTTTTACATGCTTCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCATTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTGAAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTGAGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAACTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTCTAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC]




>consensus_5976#0
TATTTTTAAGAGTTAAAGCTTTTGTAAGATTTTGCAATTCTAATTCTAGTTCCTGCCTTC
GTTTTGCGCATATTTCATTGTTTTTACATGCTTCAACGCATATGGGATCACAGGAATTTA
ATGAAGTACTTCGAGACTCAGTCATTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTG
GTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGA
ATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTT
GTAGACTGGCACGATCCGCCTGAAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAAC
TTTCGGATTCTTGCTGAGCTTGAGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTA
ACTGTTGAACTTGGCCACGTAACTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATT
TTAAATTTCTAGCCTCGGCTTCTAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTAC
CGCCCGACGAC

consensusID : consensus_5976#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 316
fasta sequence

                              [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG]

[-] EMBL CD087246             [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG]
[-] EMBL CD087240             [CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAAAACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGTGATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAACCTTACTTACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAGGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGATATTTACGCTCTTCAG]




>consensus_5976#1
CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAA
AACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGT
GATAATTGACGAGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAAC
CTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGAG
GAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACGA
TATTTACGCTCTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5976#0      -----------------------TATTTT-TAAGAGTTAAAGCTTTTGT----AAGATTT 32
consensus_5976#1      CATTCTGTGTGAAGACGACAAACTATGGTGTACGAATACCATCTTTTATTTGAAAAATAA 60
                                             ***  * ** ** *   * ***** *    ** **  

consensus_5976#0      TGCAATTCTAATTCTAGTTCCTGCCTTCGTTTTGCGCATAT---TTCATTGTTTTTACAT 89
consensus_5976#1      AACATATCCCATAGTTTTATTAACTTTGACTATTTTTATACAAGCTAACTAATTACACGT 120
                        **  **  **  *  *     * **   * *    ***     * * *  **  ** *

consensus_5976#0      GCT--TCAACGCATATGGGATCACAGGAATTTAATGAAGTACTTCGAGACTCAGTCA--- 144
consensus_5976#1      GATAATTGACG-AGACGAAAGCACTAATTGTTGAGGAAGGCATAGATAGTTTAAATAAAA 179
                      * *  *  *** * * *  * ***      ** * ****   *       * *   *   

consensus_5976#0      --TTGAAGCTTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGA 202
consensus_5976#1      CCTTACTAACTTGGAATCTGTAGTTTTAGAAATAACTGGTTCATTAGATGTTGATTCTGA 239
                        **      **************************************************

consensus_5976#0      GGAGCTTGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACG 262
consensus_5976#1      GGAGCTCGCTTCTATTTGTTTACCAGATTGTTGTTTGAATTGCTGTTCGAGAAGCAAACG 299
                      ****** *****************************************************

consensus_5976#0      ATATTTACGCTCTTCAGTGAGACGTTTCTCAGCTGCTTGTAGACTGGCACGATCCGCCTG 322
consensus_5976#1      ATATTTACGCTCTTCAG------------------------------------------- 316
                      *****************                                           

consensus_5976#0      AAGGCGTTGAGTCAACTGATTGAGCTTGGCTTGCAAACTTTCGGATTCTTGCTGAGCTTG 382
consensus_5976#1      ------------------------------------------------------------
                                                                                  

consensus_5976#0      AGAACTTTCAGAGCGATATGTTCGTTCAGCAGCAAGTAACTGTTGAACTTGGCCACGTAA 442
consensus_5976#1      ------------------------------------------------------------
                                                                                  

consensus_5976#0      CTGAATTTCTGAACTACGTAAAGATTGGATTTCCGATTTTAAATTTCTAGCCTCGGCTTC 502
consensus_5976#1      ------------------------------------------------------------
                                                                                  

consensus_5976#0      TAGTTTTAAAGTATACTCATCCTTGTTAGCATTTTTACCGCCCGACGAC 551
consensus_5976#1      -------------------------------------------------