cluster # 5998

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Schistosoma mansoni
cluster # 5998 cluster # 5998 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5998#0 length = 703 sequences # 2

consensus_5998#1 length = 114 sequences # 1

consensusID : consensus_5998#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTACACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCGTTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTATG]

[+] EMBL CD080642             [GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTACACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCGTTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTAT ]
[-] EMBL CD074555             [                                                                            GTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATTTATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAATTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTATTTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCAAAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAGCACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTGTCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTACTTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACTAGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAATAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAAAAATATTTCCATTTTTCGTTGCAGAGAGTCTATTTTATGAATGAAAAGATATATGATTATG]




>consensus_5998#0
GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTA
CACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATT
TATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAA
TTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTAT
TTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCA
AAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAG
CACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTG
TCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTAC
TTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACT
AGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAA
TAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCG
TTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTATG

consensusID : consensus_5998#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 114
fasta sequence

                              [TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATAATGGACCACGCATATCTCCATTCGGTTCAAACAGATGTGAAAATAATGCATGTACTTTGAATAATTCA]

[+] EMBL CD065566             [TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATAATGGACCACGCATATCTCCATTCGGTTCAAACAGATGTGAAAATAATGCATGTACTTTGAATAATTCA]




>consensus_5998#1
TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATAATGGACCACGCATA
TCTCCATTCGGTTCAAACAGATGTGAAAATAATGCATGTACTTTGAATAATTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5998#0      GAGCCAGATTCGGCCGAGGAGATATACGTGGTCCATTATCCGGTTTAACACGAATGACTA 60
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      CACGACCTGAAGTATCGTCCGAAGTTCCTACATCCTCACAGAATAATCTCAATCCGGATT 120
consensus_5998#1      --------------TTGGACGATACTTCAGGTCGTGTAGTCATTTGTGTTAAACCGGATA 46
                                    * *  ***   * *         *   * *  * * ** ****** 

consensus_5998#0      TATTGTATGGACCGGATTTACCGCCGAATTTTACTCCTACATCTGATAAAGCCAATCCAA 180
consensus_5998#1      ------ATGGACCACGCATATCTCC--ATTCGGTTCAAACAGATG-TGAAAATAATGCAT 97
                            *******     ** * **  ***    **  ***  ** * **   *** ** 

consensus_5998#0      TTTCTGTGACAAAAGATCAAGAAGAAGCATCACGTTCTACCCTGTCAGATGATATTCTAT 240
consensus_5998#1      GTACTTTGA--ATAATTCA----------------------------------------- 114
                       * ** ***  * *  ***                                         

consensus_5998#0      TTGTGGAATCTCATCTTGTCAATCGTAGTTCTGCTAAACATAAGAAGTCAAAGAACAGCA 300
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      AAAGAAAACATAAAACAAAACATAAAAAACAACATAAGAGCAAGAAAGTTTCTCGTAAAG 360
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      CACCAATTTCTTCTTCGGATTCAAACTCTTCTGATACTTCTGATTAAATTTTGACGGTTG 420
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      TCAAATTTGTACATATAGTGGTTTTTTGTATATTTTCAAATTTATTTTCCAATTTACTAC 480
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      TTACCGCTACTACTACTACTACTACCGTTACCATGTTGTTTTGTAGCCTTCTTCCCGACT 540
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      AGAAATTTTTCATTGTATTTCTTTACAGATAACCTCACGTATCGTATATCCTTCTTGAAA 600
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      TAAGCGTTTTGATTTCTGATTCTATTTTCTCTATATACCGAANAATATTTCCATTTTTCG 660
consensus_5998#1      ------------------------------------------------------------
                                                                                  

consensus_5998#0      TTGCAGAGATTCTATTTTATGAATGAAATGATATATGATTATG 703
consensus_5998#1      -------------------------------------------