cluster # 6005

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Schistosoma mansoni
cluster # 6005 cluster # 6005 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6005#0 length = 812 sequences # 2

consensus_6005#1 length = 600 sequences # 1

consensusID : consensus_6005#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 812
fasta sequence

                              [GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATGGATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAACATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAGTTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCCTTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACATCGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCTGCACCATTTCAGTTGGATATTCTTCGTTTGAA]

[+] EMBL CD090249             [GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATGGATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAACATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAGTTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCCTTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACATCGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTC                                                                                                                                                                                                             ]
[-] EMBL BG931718             [                                                                                                                                                                                                                                                                                                                                                      CTGGCGACTATAGGAGTTTCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAAGTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATTTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCTGCACCATTTCAGTTGGATATTCTTCGTTTGAA]




>consensus_6005#0
GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATG
GATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAAC
ATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAG
TTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCC
TTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACAT
CGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGT
TCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAA
GTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATT
TGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTAC
TGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATA
GTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATA
TTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATC
AGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCT
GCACCATTTCAGTTGGATATTCTTCGTTTGAA

consensusID : consensus_6005#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence

                              [AATATCTCAGTCTAATGTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGAATTAGTTGATTCTGCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCTGGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAACAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAATATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGCAAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTGTC]

[+] EMBL CD082427             [AATATCTCAGTCTAATGTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGAATTAGTTGATTCTGCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCTGGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAACAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAATATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGCAAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTGTC]




>consensus_6005#1
AATATCTCAGTCTAATGTGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGA
TTGTCATAAGAATCTACTGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCA
GATTCTCTCGACGAATAGTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGC
GGAAGACTCTCCATATATTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATG
TCCTGTTCTGAACCATCAGAGTTTGTCGATGCGAGAGATAGAAGAATTAGTTGATTCTGC
ACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCTGG
TGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAACA
GGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAATA
TTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGCAA
ATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTGTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6005#0      GAATTGTTGTTCCTGATGAAGTTAACGGAACCTATTCGGATATTAGATCGCCGGTAGATG 60
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      GATCTATTACAAATAGACTACTTCATTTGATTGTATATCTAATTATTCTAGATTCAAAAC 120
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      ATGAATTTCCGGAATCTAGACTTGCAAAATTAAATTCAAGTTCGTGTACACAATGTCCAG 180
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      TTGATTGGCCAGCTATTCGCCCTTGCGTTGATCCGTGTTCATTCACATATCAACCAACCC 240
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      TTGTCAATCGGATACCTAGACCATTCGGCATTGAGGATACGGGTGTTTCCAGTTTGACAT 300
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      CGGAACGACAATGTCAAAATATGAATATTTCCCCTACGGACGCTGGCGACTATAGGAGGT 360
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      TCTCAAAGCACTCTGAAAATACTTTCGACGGCGATGTACGATGGCACATGTCTTACTTAA 420
consensus_6005#1      ------------------------------------------------------------
                                                                                  

consensus_6005#0      GTATGTGTCCTTCTCATCAAGTTCAACTACATCGTGTACTTCGAATATCTCAGTCTAATT 480
consensus_6005#1      -------------------------------------------AATATCTCAGTCTAATG 17
                                                                 **************** 

consensus_6005#0      TGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTAC 540
consensus_6005#1      TGGAATCTCGGATAACACAATTAATTGGTCGGTCTGGCGTTGATTGTCATAAGAATCTAC 77
                      ************************************************************

consensus_6005#0      TGTGGTACAAACTATTCGATACCAATTCTTCTTTGGCTACCCAGATTCTCTCGACGAATA 600
consensus_6005#1      TGTGGTACAAACTATTCGATACCAATTCTGCTTTGGCTACCCAGATTCTCTCGACGAATA 137
                      ***************************** ******************************

consensus_6005#0      GTCACTCCCTTTCCCAAGATGTCGTTAAAACCAACTGTCAAGTGGAAGACTCTCCATATA 660
consensus_6005#1      GTCACTCCCTTTCCCAAGATGTCGCTAAAACCAACTGTCAAGCGGAAGACTCTCCATATA 197
                      ************************ ***************** *****************

consensus_6005#0      TTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTTACTTATGTCCTGTTCTGAACCATC 720
consensus_6005#1      TTTCTTTAGGGACCAACCTGAACCCGGTAGATAGTGACTTATGTCCTGTTCTGAACCATC 257
                      *********************************** ************************

consensus_6005#0      AGAGTTTGTCGATGCGAGAGATAGAAGTAATTTTTTTTAATTATAGAATTAGTTGATTCT 780
consensus_6005#1      AGAGTTTGTCGATGCGAGAGATAGAAG-------------------AATTAGTTGATTCT 298
                      ***************************                   **************

consensus_6005#0      GCACCATTTCAGTTGGATATTCTTCGTTTGAA---------------------------- 812
consensus_6005#1      GCACCATTCCAGTTGGATATTCTTCGTTTGGATCCCCGTTTAATTGAATTGCTTAATGCT 358
                      ******** ********************* *                            

consensus_6005#0      ------------------------------------------------------------
consensus_6005#1      GGTGGTTGCCATTTGAACTCTGTCAGTGCATTGTTAAACAAAGAATTTATTGATTTACAA 418
                                                                                  

consensus_6005#0      ------------------------------------------------------------
consensus_6005#1      CAGGGTAATCACCATCAAATTGATCAGATGAAACTGAATATTAGTTCGAAATTATATAAA 478
                                                                                  

consensus_6005#0      ------------------------------------------------------------
consensus_6005#1      TATTCTACATCGGAGACTATACCGTGTATTGCCTACCGATTTAGCCATTCAGTTGAGAGC 538
                                                                                  

consensus_6005#0      ------------------------------------------------------------
consensus_6005#1      AAATTGGATGAAGCATCAAATATAGATCGTCAATGTATACAAAATTATATGGTCTTGTTG 598
                                                                                  

consensus_6005#0      --
consensus_6005#1      TC 600