These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTAAGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCTAGGTGAAAGTAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAACTCGCCTGGATTACTCTTGCTCCAAAGTAATTGAAATTTGTGGATTAACTTCGTAGATTAACGAAACGTTGTAGACTGAATTGGAATAAGTCTAATTTAGGTTGAACACGTAGAATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCACCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTAGGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAGTAGATAGTTTTTGATAGTAGTTAGTTGACAGTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTATTGGTTATACCAGTGGATAAGTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT] [+] EMBL CD154773 [TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTAAGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCTAGGTGAAAGTAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAACTCGCCTGGATTACTCTTGCTCCAAAGTAATTGAAATTTGTGGATTAACTTCGTAGATTAACGAAACGTTGTAGACTGAATTGGAATAAGTCTAATTTAGGTTGAACACGTAGAATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCACCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTAGGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAGTAGATAGTTTTTGATAGTAGTTAGTTGACAGTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTATTGGTTATACCAGTGGATAAGTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT] consensusID : consensus_603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence [ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGTCTAGGTTTCACGAAAAATATGATGGATAGACCTACTAAAGATTTATCAGGAGGTTGGAGAATGCGTGTCAGTCTGGCTAGAGCTTTATTTTTGGAACCGACACTCTTACTACTAGACGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAGATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTACAGATATCATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATTATAATAACTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAAAGAATATGAAAAACAAGAAAAACGTCTTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAAAAAATCAACGTGATGTATTAACAAGAAAACAGGCGAAAAATAAGCAAACTTCCAATGAAGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT] [+] EMBL CD163023 [ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGTCTAGGTTTCACGAAAAATATGATGGATAGACCTACTAAAGATTTATCAGGAGGTTGGAGAATGCGTGTCAGTCTGGCTAGAGCTTTATTTTTGGAACCGACACTCTTACTACTAGACGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAGATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTACAGATATCATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATTATAATAACTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAAAGAATATGAAAAACAAGAAAAACGTCTTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAAAAAATCAACGTGATGTATTAACAAGAAAACAGGCGAAAAATAAGCAAACTTCCAATGAAGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_603#0 TTGCTCGTGTATATGAAATACGTTTTTTCGGAGTATGTTGACTTACAAGTCATAAATGTA 60 consensus_603#1 ------------ATTAAAGCTGATGCAGTAGAAGGCAAAGCTAGACGTATATTATCTGGT 48 ** *** * * ** * ** * ** ** consensus_603#0 AGTAGTTTCGACTAACATTTGACGGCAGTGACAGAATGTATGACTACTCT-AGGTGAAAG 119 consensus_603#1 CTAGGTTTCACGAAAAATATGATGG-ATAGACCTACTAAAGATTTATCAGGAGGTTGGAG 107 ***** ** ** *** ** * *** * * * ** **** ** consensus_603#0 TAGCCGCAAAATGTTAGACATTATAAACATTATACGAAATTAACTAACTCAATTATGAAA 179 consensus_603#1 AATGCGTGTCA-GTCTGGCTAGAGCTTTATT-TTTGGAACCGAC-ACTCTTACTACTAGA 164 * ** * ** * * * *** * * ** ** * * ** * * consensus_603#0 CTCGCC--TGGATTACTCTTGCTCCAAAGTAATTGAA--ATTTGTGGATTAACTTCGTAG 235 consensus_603#1 CGAACCGACGAATCATTTAGATTTGAATGCAGTTATATGGTTAGATAATTATCTTCAAAG 224 * ** * ** * * * ** * * ** * ** * **** **** ** consensus_603#0 ATTAACGAAA-CGTTGTAGACTGAATTGGA--ATAAGTCTAATTTAGGTTGAACACGTAG 292 consensus_603#1 ATGGAAGAAAACTCTCCTGATTGTTTCACATGACCAGTCATTCTTAGATAATGTTTGTAC 284 ** * **** * * ** ** * * * **** **** * *** consensus_603#0 AATTGCCTGACGAAGTTTAAACAAGATCTAACATTGCAGGAAATTTATAGTTCAAACTCA 352 consensus_603#1 AGATATC--ATCCATTTAGACCAACGTCAGTTATTTTATTATAGAGGCAATT-ATAATAA 341 * * * * * ** * *** ** *** * * * * ** * * * * consensus_603#0 CCGTAAATTTCTAGCATTTGTATCCTCTGATTCGCCATGGAGCTCAGCAATTGGAAATTA 412 consensus_603#1 CTTCAAAAGTATGTTTATCCAACGTAGAAAAGAACAATTGAA---AGAATATGAAAAACA 398 * *** * * * * * * ** ** ** * ** *** * consensus_603#0 GGCAGGCAGTGGTCAAGAAAGTAAAATATTCTAG--TAGATAGTTTTTGAT----AGTAG 466 consensus_603#1 AGAAAAACGTC-TTAAAGAATTAAAACAATCTGGAATGAGTAATAAACAAGCTCAAGCAA 457 * * ** * ** ** ***** * *** * * ** * * ** * consensus_603#0 TTAGTTGACA--GTGAATAAGCAGAAAGATGAATTTAATAATCGGCAGTTTATCCTGTAT 524 consensus_603#1 AAAATCAACGTGATGTATTAACAAGAAAACAGGCG-AAAAATAAGCAAACT-TCCAATGA 515 * * ** ** ** * ** ** * ** *** *** * *** * consensus_603#0 TGGTTATACCAGTGGATAA--GTTGCANACAGATATGCGTACGTGTTGCCTTGAGGCCAT 582 consensus_603#1 AGCTAATGATAATGGAAAACCACAATTATTATCTAAACCAAAGGAGTATGTTGTTAAGTT 575 * * ** * **** ** * ** * * * * *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||