These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 586 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATG-TTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGAGTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT] [+] EMBL AI977715 [TACGCAGTACGGTAATGCAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAA ] [+] EMBL AI976826 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTGAATAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATTAATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAATTAGCCAATTGGGGTTTCACGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATACGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAATTTGTTGTATAATCCCAATGTTGACTATCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGGATACCGCTACCAGATGTTTCAGTTAAAATAGATCGAGCAGAGTTATTATG ] [+] EMBL CD181724 [ GCATTATCATTGACTGATAGTTTTAAAAAATTTGTTGTATAGTCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAATCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGAGTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT] consensusID : consensus_6032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence [CAGTGTACCCGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAGAAGTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTATTTCGAAATAAATTAGTATTTACCATCCCTCCGGTAAATAAACAATAAACATCAAGTACTTTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCGTGAAAATAAATTGCAAGCCAGTTTAGAATCGGAATAAGCTTTATTGGAATTTAAATCTGAAGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT] [+] EMBL CD113708 [CAGTGTACCCGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAGAAGTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTATTTCGAAATAAATTAGTATTTACCATCCCTCCGGTAAATAAACAATAAACATCAAGTACTTTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCGTGAAAATAAATTGCAAGCCAGTTTAGAATCGGAATAAGCTTTATTGGAATTTAAATCTGAAGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6032#0 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTGAA 60 consensus_6032#1 ------------------------------------------------------------ consensus_6032#0 TAGGGAGAGTTATATTATGTTTTTTAAAAAATTCTAAAGACTTGTTACATTTATAATATT 120 consensus_6032#1 ------------------------------------------------------------ consensus_6032#0 AATTGTTCGCCTGTCATTTTTGTAGTTTGCTTATGTTCATCGTAAATGCTAAGTGATAAT 180 consensus_6032#1 --------------------------------------------------CAGTG-TACC 9 **** ** consensus_6032#0 TAGCCAATTGGGGTTTCA-CGAAAATACACTGAGCTCTTTGTATATAATACAGATAAATA 239 consensus_6032#1 CGTGTAGCAAATGTTTCAGTTAAAATAGATTGAGCAGAGTTATTATGA-GCA-ATAGGAA 67 * ****** ****** * ***** * *** * ** *** * consensus_6032#0 CGTAATTGCACACAGAAGTGAATGATTTATGCATTATTATTGACTGATAGTTTTAAAAAA 299 consensus_6032#1 CTTCATCACTAACTGCA--CAATGAACAATCGTTTGGCAACCCTCTATAGATTTCAAGAG 125 * * ** * ** * * ***** ** ** * **** *** ** * consensus_6032#0 TTTGTTGTATAATCCCAAAGTTGACTAGCTAGATGAAGATTGAGTGAATTATCAGGCCAA 359 consensus_6032#1 AA-GTTGCATTAAACCACGGATGAAACGCTGAGTGAATGGTGAATATTTTATTAAAGTAT 184 **** ** * *** * *** *** **** *** * **** * * consensus_6032#0 TCAATAGGTGTACAATTGTTATACAGCATACCGCTACCAGATGTTTCAGTTAAAATAGAT 419 consensus_6032#1 T---TCGAAATA-AATTAGTATTTACCATCCCTCCGGTAAAT-----AAACAATAAACAT 235 * * * ** **** *** * *** ** * * ** * ** * * ** consensus_6032#0 TGAGCAGAGTTATTATGAGCAATAGGAACTTCATCACTAACTGCACAATGAACAATCGTT 479 consensus_6032#1 CAAGTACT-TTATTGGCACCTGAACCATACCTCTGATGAAGTTCGCG-TGAA-AATAAAT 292 ** * ***** * * * * * * ** * * * **** *** * consensus_6032#0 TGGCAACCCTCTATAGGAGATTTCAAGAGAAGTTGCATTANACCACGGATGANACGCTGA 539 consensus_6032#1 TG-CAAGCCAGTTTAGAA----TCGGAATAAGCTTTATTGGA------ATTTAAATCTGA 341 ** *** ** * *** * ** * *** * *** * ** * **** consensus_6032#0 GTGAATGGTGAATATTTTATTANAGTATTTCGANAATAATTAGTATT 586 consensus_6032#1 AGCAGTATTGTACGGTTGAAACAAATCTTCTGTAGAGAACGTT---- 384 * * ** * ** * * * ** * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||