These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [CAAGCTTACTATTTAATGGGAAGAGCTGGTGAACTTAAGGGCACCTCAATGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTACGTAAAAATACATCACATCAATTGAATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTTTTGTACAAAGGCAAAAATTCAGATGCTTAGTTGGACTGCAGGACGATTCAGTAACTCCCGGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAATCGAGCTATGCTGGCTGGAACAATCGTTCCTCGAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTACC] [+] EMBL CD094370 [CAAGCTTACTATTTAATGGGAAGAGCTGGTGAACTTAAGGGCACCTCAATGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTACGTAAAAATACATCACATCAATTGAATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTTTTGTACAAAGGCAAAAATTCAGATGCTTAGTTGGACTGCAGGACGATTCAGTAACTCCCGGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAATCGAGCTATGCTGGCTGGAACAATCGTTCCTCGAGGTCCTACCATGCCAGACAGGTCGGTTGAAGAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGATGCTACC] consensusID : consensus_6045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence [ATCGTTCCTCAAGGTCCTAACATGCCAGGTAGATCCGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCTTACTGCTGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATAACAGCGATGCTGCCTTCCACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAAATGCACACCCTGCCTTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAAGTAAGGAGCTAACACGAAAGTTACCCACAAGAAGATCGTGTGTGACCAGCCTCAAACAGTTGGCCCTTTGGCACTGCCGTCACTCACTCAGGTCACTAAAATTAGCTCTAACCCAATTTCCTTTCCAGGCTTCTCTAGGAG] [+] EMBL CD186816 [ATCGTTCCTCAAGGTCCTAACATGCCAGGTAGATCCGTTGAAGAGCGGTAAGACTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCTTACTGCTGACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATAACAGCGATGCTGCCTTCCACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAAATGCACACCCTGCCTTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAAGTAAGGAGCTAACACGAAAGTTACCCACAAGAAGATCGTGTGTGACCAGCCTCAAACAGTTGGCCCTTTGGCACTGCCGTCACTCACTCAGGTCACTAAAATTAGCTCTAACCCAATTTCCTTTCCAGGCTTCTCTAGGAG] consensusID : consensus_6045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 385 fasta sequence [GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTGTCTATGAAGTCCTTCATTCTGCTTAACAATACCCTGTTGAAGACTTTTCCTGGTATTGAGAGAAGAGTGATGCCCTTGTAGTTAACATACTTTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTGCTGCCTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCAACAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAGTTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTGCTGATTTATTTATTTAAACACATAAATATTGGTACAAGGTTGCACC] [+] EMBL CD132044 [GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTGTCTATGAAGTCCTTCATTCTGCTTAACAATACCCTGTTGAAGACTTTTCCTGGTATTGAGAGAAGAGTGATGCCCTTGTAGTTAACATACTTTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTGCTGCCTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCAACAGTGATCCATTCCTTGTGATGGTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAGTTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTGCTGATTTATTTATTTAAACACATAAATATTGGTACAAGGTTGCACC] consensusID : consensus_6045#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [ACGAGATTCCATCTTTTATAGTTTNAGTATTATGCTTTTTTAACTNGCAAATATTNAGTTTATCATAGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGTAGGTCATCAGNGGTATTGATCTNATGAACTATCAAGGGGGATAAAGTATGATCCATTTATGACTGATTNGATAGGTGGTGTTAATANNCCTTTACGGNTATTAATGAAGGTGCCGCATTCANNACTTGTAACATCTAGGGATGTCATACATTCTTTTCCAGTNCCTGACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTGTTTAGNGGTANTATTAANTCGCTTAGGGGTGTTTAGAGGNTATNGTNCANAA] [+] EMBL SM292 [ACGAGATTCCATCTTTTATAGTTTNAGTATTATGCTTTTTTAACTNGCAAATATTNAGTTTATCATAGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGTAGGTCATCAGNGGTATTGATCTNATGAACTATCAAGGGGGATAAAGTATGATCCATTTATGACTGATTNGATAGGTGGTGTTAATANNCCTTTACGGNTATTAATGAAGGTGCCGCATTCANNACTTGTAACATCTAGGGATGTCATACATTCTTTTCCAGTNCCTGACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTGTTTAGNGGTANTATTAANTCGCTTAGGGGTGTTTAGAGGNTATNGTNCANAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6045#0 ---------CAAGCTTACTATTTAATGGGA--AGAGCTGGTGAACTTAAGGGCACCTCAA 49 consensus_6045#1 ATCGTTCCTCAAGGTCCTAACATGCCAGGT--AGATCCGTTG-----AAGAGCGGTAAGA 53 consensus_6045#3 --------ACGAGATTCCATCTTTT---AT--AGTTTNAGTA---TTATGCTTTTTTAAC 44 consensus_6045#2 -GATCCTTACAGAATCCAGCCTGTTGATCTCGAAGTTCGGTG--TCTATGAAGTCCTTCA 57 * * * * * * consensus_6045#0 TGTCCAATAATAAGACGATAATGTTAATGAGTTTTTTGTACATGTTTAC-GTAAAAATAC 108 consensus_6045#1 CTAAAAGCAGCAAACCCAAAGTCCGAAGGAGAAGTCT-TAC-TGCTGACTGTACAGAGGT 111 consensus_6045#3 TNGCAAATATTNAGTTTATCAT---AGTNCGTTTCGCTTTNCTGANCCAGTTAAGGTAGT 101 consensus_6045#2 TTCTGCTTAACAATACCCTGTTG--AAGACTTTTCCTGGTATTGAGAGA---AGAGTGAT 112 * * * * ** * consensus_6045#0 ATCACATCAATTGA-ATATCGTTGATACTGAAAACAACAAGGATTGACACGAACCAGTTT 167 consensus_6045#1 GTGACGGCAGTAAG-GTGTT-----TCCTTCAGACAACCAGCATAACAGCGATGCTGCCT 165 consensus_6045#3 AGGTCATCAG--NG-GTATTG---ATCTNATGAACTATCAAGGGGGATAAAGTATGATCC 155 consensus_6045#2 GCCCTTGTAGTTAACATACT-----TTCTGAGATCGCTCTTGTTTGGCTGGTATTGATTG 167 * * * * consensus_6045#0 TTGTACAAAGGCAAAAATTCAGAT-GCTTAGTTGGACTGCAGGACGATTCAGTAACTCCC 226 consensus_6045#1 TC---CACAAGGAAGAGTGGAGTTAGAAAAGATCGACCCTAAAA--ATGCACACCCTGCC 220 consensus_6045#3 AT---------------TTATGACTGATTNGATAGGTGGTGTTA----ATANNCCTTTAC 196 consensus_6045#2 CTGC-CTTTTGTTCCTCCTTTCTTGAATCTTATCCAGTGTACCA----ACAGTGATCCAT 222 * * * consensus_6045#0 GGCCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGAAGCAAT-CGA 285 consensus_6045#1 TTATCCCACGGATATCCGTCTCCAGCGGTAAGGTCCCAACAA-GTAAGGAGCTAACACGA 279 consensus_6045#3 GGNTATTAATG--AAGGTGCCGCATT--CANNACTTGTAACATCTAGGGATGTCATACAT 252 consensus_6045#2 TCCTTGTGATG---GTGCTTCTTGTGGCCCAGAACCTCCTGACATGTTGATACTTTCCAG 279 * * ** * consensus_6045#0 GCTATGCTGGCTGGAACAATCGTTCCTCGAGGTC-CTACCATGCCAG-ACAGGTCGGTTG 343 consensus_6045#1 AAGTTACCCACAAGAA-GATCGTGTGT---GACC-AGCCTCAAACAG-TTGGCCCTTTGG 333 consensus_6045#3 TCTTTTCCAGTNCCTG-ACTTATATATAAAGATGGATGCAGTNCCAGGTCGAATTAATTG 311 consensus_6045#2 TTGCTCTCCATAGTAGTTCCCTCTCAACTGAGTACATCATGAAAGGCTTGGAACCTGTTG 339 * * * consensus_6045#0 AAGAGCGGTAAG--ACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACTGCCG 401 consensus_6045#1 CACTGCCGTCACTCACTCAGGTCACTAAAATTA--GCTCTAACCCAATTTCCTTTCCAGG 391 consensus_6045#3 TTTAGNGGTANT---ATTAANTCGCTTAGGGGT--GTTTAGAGGNTATNGTNCANAA--- 363 consensus_6045#2 CTGATTTATTT----ATTTAAACACATAAATATTGGTACA-AGGTTGCACC--------- 385 * * * * * * consensus_6045#0 ACTGTACAGAGGTGTGACGGCAGTAAGGTGTTTCCTTCAGACAACCAGCATGACAGCGAT 461 consensus_6045#1 CTTCTCTAGGAG------------------------------------------------ 403 consensus_6045#3 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GCTACC 467 consensus_6045#1 ------ consensus_6045#3 ------ consensus_6045#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||