These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 542 fasta sequence [TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAAGTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAAGA] [+] EMBL CD200981 [TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAAGTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAAGA] consensusID : consensus_6049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 456 fasta sequence [ATATGGTGGCTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAGGAGCCGG] [+] EMBL CD129907 [ATATGGTGGCTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAGCTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCT ] [-] EMBL CD169323 [ ATGGTGGGTCGGTCAGGTTAAATGGAATTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATCCTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGGAGCTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAGATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAACCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAGGAGCCGG] [-] EMBL CD155629 [ ATGCCCAACCGTCGCTGGTGCGCTCATAGTATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCACAATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTTTAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6049#0 TCAGCTTTTGTTTCATAATGTAATACTGTCTCTGATATTATATCACTCATTTAATGGCAA 60 consensus_6049#1 ------------------------------------------------------------ consensus_6049#0 GTGGATAGACTGATTAAATGCGCTGCGCATTATATGGTCATAGCTTCTTGCTAAATGGAA 120 consensus_6049#1 -------------------------------ATATGGTGGCTCGGTCAGGTTAAATGGAA 29 ******* ** * ********* consensus_6049#0 TTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATC 180 consensus_6049#1 TTGATGTTGGTGCAATCGCTGTAATGCCCATTTGTGATTGTGTCGTTAAACATTGTGATC 89 ************************************************************ consensus_6049#0 CTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTGTGGGGTTAAGAAGTTAGAAG 240 consensus_6049#1 CTGGCGGAGGCGGTGCAGGAGCTCGAGGAGGTGGTAATTATGGGGTTAAGAAGTTAGAAG 149 *************************************** ******************** consensus_6049#0 CTTGATACTGAAAATACGTCGCAGAACCATTATGTTTAACGGATGCGACTACAGAAATAG 300 consensus_6049#1 CTTGATACTGAAAATACTTTTTAGAACCATTATGTTTAACGGATGCGACTGCAGAAATAG 209 ***************** * **************************** ********* consensus_6049#0 ATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAA 360 consensus_6049#1 ATGTGTCATTAAGTACACCATTTGTGTTGTGAAGATTAGAAGAAACACTGTTATGCCCAA 269 ************************************************************ consensus_6049#0 CCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCAC 420 consensus_6049#1 CCGTCGCTGGTGCGCTCATAGCATTGGCATCACTTGTGCTGCAAATCGTATTACTTCCAC 329 ************************************************************ consensus_6049#0 AATATGTAGTTGTGTAAGCCTCTTGCATACCATTTANGAAACCGTTTGTACCACCTAGTT 480 consensus_6049#1 AATATGTAGTTGTGTAAGCCTCTTGCATACCATTTAGGAAACCGTTTGTACCACCTAGTT 389 ************************************ *********************** consensus_6049#0 TAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAA 540 consensus_6049#1 TAATACCAGCTCCCATTCCAGGGACTCTTCTTTGCTTGCTGCTATGATTTGAGTCATTAG 449 *********************************************************** consensus_6049#0 GA----- 542 consensus_6049#1 GAGCCGG 456 ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||