These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6050#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [AAAACCATTATTATTGTTAGTAGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAATACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAAATGCTGTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAACATTGTACCAGAAGTAGAGTAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAACAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATATATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACTCGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA] [+] EMBL CD114181 [AAAACCATTATTATTGTTAGTAGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAATACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAAATGCTGTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAAC ] [-] EMBL CD168679 [ TGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTCGCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAGACCATAGTTGATAGCACGCACACCCATAAGAAAATATGTAACATTGTACCAGAAGTAGAGTAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAACAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATATATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACTCGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA] consensusID : consensus_6050#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCTGATAGTACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACTAACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAAATGTTTGGATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATAATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAAGACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGCACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTGATTAGT] [+] EMBL CD131280 [GTATAATAATAGGAACAACTGAAAATGCTGCCAAAACCATACCCAAACCAGAAATAATGAAGGCTGGATCATGTGATTGAGTTAGATCAATTATATAACCTGATAGTACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACTAACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAAATGTTTGGATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATAATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAAGACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGCACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTGATTAGT] consensusID : consensus_6050#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAAGAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAAACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAGGAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAA] [-] EMBL CD188282 [GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAAGAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAAACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAGGAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACCAATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAGACCATTTGTAAGACGATGTAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCATCATTAGCGGCCAGTCCCATACCAAACACGCTAGAATAAACTGCCATAGACATAAATGTAGTAAGTAACGGCATCAAACACGTTGATACACCACATGCAAGAATCATGAAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6050#0 ---AAAACCATTATTATTGTTAGT--AGTAGTAGTATCGTTGTTACGTTTGAGCTTCTAA 55 consensus_6050#2 GTGAATGTTGCTCTAGTGCTCAGTTCAACAACGACAACTCAAGTCCGAATGTTGTGGTAA 60 consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 TACAATTTCAGAACAATTTTGCTGTAAACGACGTAATCGACGCGCACGCCTTCTTCGAAA 115 consensus_6050#2 GAAGAACTTTGGAGCGCTGAACCGGAAACTTGATTATAAACCTATAAGATACAGAATAAA 120 consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 ATG-CTGTATAATAATAGGAA----CAACTGAAAATGCTGCCAAAACCA--TACCCAAAC 168 consensus_6050#2 ACAACAATGGGACTTTCCAGAGTCCTAGTCGGACATGTCTATCGTCCGAGCTACATAGAG 180 consensus_6050#1 ------GTATAATAATAGGAA----CAACTGAAAATGCTGCCAAAACCA--TACCCAAAC 48 * * * * * * * *** * * *** * * consensus_6050#0 CAGAAATAATGAAGGCTGGATCATGTGATTG--AGTTAGATCAATTATATAACC------ 220 consensus_6050#2 GAGAGAACGTCGAAAGCGGTCAATTTGAACAGCAGGTACGGCTTCGGAAATACC------ 234 consensus_6050#1 CAGAAATAATGAAGGCTGGATCATGTGATTG--AGTTAGATCAATTATATAACCTGATAG 106 *** * * * ** ** *** ** ** * * *** consensus_6050#0 ---AATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAG 277 consensus_6050#2 ---AATAAGAGGCGGTCCCAAAATATTGGCCACACCCTGACAAAAAAAACAAATTCCAAG 291 consensus_6050#1 TACAGGAAAAGACAAATAGGAAATGAAAGGAAACAAGTCACAATTCAATCATTTTGCACT 166 * ** ** * **** * * * **** ** ** ** ** consensus_6050#0 ACCATTTGTAAGA-CGATG-TAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCA 335 consensus_6050#2 ACCATTTGTAAGA-CGATG-TAGTCCAACAAATTCTACCAACAAAACAGTGCACAGAGCA 349 consensus_6050#1 AACATTCAAAAACTCAATACTACTCGATCGCGCAGAACTAAACAAGCATAGTTGGGCCAA 226 * **** ** * ** ** ** * * ** ** ** ** * * * consensus_6050#0 TCATTAGCGGCCAGTCCCATACCAAACACGCTAG-AATAAACTGCCATAGACATA----A 390 consensus_6050#2 TCATTAGCGGCCAGTCCCATACCAAACACGCTAG-AATAAACTGCCATAGACATA----A 404 consensus_6050#1 ATGTTTG-GATAAATTCTTAGCCATACATGAAAATAACGTTCTTTTTTTACCACAGTATA 285 ** * * * * * *** *** * * ** ** * ** * * consensus_6050#0 ATGTAGTAAGTAACGGCATCAAACACGTTGATACACCA-----CATGCAAGAATCATGAA 445 consensus_6050#2 ATGTAGTAAGTAACGGCATCAAACACGTTGATACACCA-----CATGCAAGAATCATGAA 459 consensus_6050#1 ATAAACTTAGTTAAGAATTTGTGTACTTCGTTAAGCGAGTAGTTATAAAATCAGTTAGAA 345 ** * * *** * * * ** * * ** * * ** ** * *** consensus_6050#0 GAAATATAAAGTCAGAGAATCGACGCCATCACGATCAGCCAAGAATCCAGCCAAAACCTC 505 consensus_6050#2 GAAA-------------------------------------------------------- 463 consensus_6050#1 GACTTTCGGAGTTTGAAAAACAAAAAGGCCGAAATAAAACCCAGTACTATTTAATTTTGC 405 ** consensus_6050#0 GCCAACCATGTTAGCACCACCAAGAACAGAAAACAAAAGGGCTGCAAGTGTCTCACTAAG 565 consensus_6050#2 ------------------------------------------------------------ consensus_6050#1 ACAATTTTTTAACATATATTCATAAGCAAAATAGAAATTGGAAGCAACGTTTTCATTTTG 465 consensus_6050#0 ACCATAGTTGATAGCACGCACACCCATAAAANAATATGTAACATTGTACCAGAAGTAGAG 625 consensus_6050#2 ------------------------------------------------------------ consensus_6050#1 ATTAGT------------------------------------------------------ 471 consensus_6050#0 TAAGAAATTTGAAACCATAAACAAAACAAAGGTAGGTCTTCTAAACAGTCGCAGATCGAA 685 consensus_6050#2 ------------------------------------------------------------ consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 CAGACGGTGAAAAATATCATGTTTGTCGGCACACATTTCTGTACAGCAATTACAACAATA 745 consensus_6050#2 ------------------------------------------------------------ consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 TATTTCCTTATCCTGACATTTTTCACCTTCATCCACCGACTTTAATTCTGATTTTCTACT 805 consensus_6050#2 ------------------------------------------------------------ consensus_6050#1 ------------------------------------------------------------ consensus_6050#0 CGCCAGACAACTACATTTGTACCCCAGTGAACACTGAGATGA 847 consensus_6050#2 ------------------------------------------ consensus_6050#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||