These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 602 fasta sequence [TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA-TGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGCTAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGATTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAATAAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTATTGAAGTAGCTCGA] [+] EMBL CD191201 [TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGATTGAATAAGTTGAACATCGTCTGGTTGCA ] [+] EMBL CD191348 [ TAGAAGATAACCAACGACAAAATCTTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAGCTGAGGGAATATCTTTAGTTTGGGAATCGTATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA TGAAGAAGTTGAACATCGTCTGGTTGCA ] [+] EMBL CD184690 [ ATCGTTTAGGTTTATTTGTTCAACGTTTTGCAGAAACAGTATTACAGTTCCAAGAGAAAGTCGATGATCTTCTAGTTACCACTCGAGAAATAGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGATTCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCTGCACCAATATTCAAATCTTCCCCAATGGGTTGCTCGTTTAGA TGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGCTAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGATTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAATAAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTATTGAAGTAGCTCGA] consensusID : consensus_6051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [CTAAAGATATTCCCTCAGCTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTGTCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAGTGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCAAGAGGTACACGAAAGCCAAGCCATTTCATATTTCGTACCTCCTTGGCAAGCGT] [+] EMBL CD193975 [CTAAAGATATTCCCTCAGCTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTGTCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAGTGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCAAGAGGTACACGAAAGCCAAGCCATTTCATATTTCGTACCTCCTTGGCAAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6051#0 TTCTATTGCACTAGAGGCGCTTACTAGGCAGTAAAATAGAAGAAAACCAACGACAAAATC 60 consensus_6051#1 ----------------------------------------------CTAAAGATATTCCC 14 * ** ** * * consensus_6051#0 TTGGTCTTTTATGTGCTGGAATGCGACGTGAAGTTCAGCTCCTAATAG-CTGAGGGAATA 119 consensus_6051#1 TCAG-CTATTAGGAGCTGAACTTCACGTCGCATTCCAGCACATAAAAGACCAAGATTTTG 73 * * ** *** * **** * * * * * * **** * *** ** * ** * consensus_6051#0 TCTTTAGTTTGGGAATCGTATCGTTTAGG----TTTATTTGTTCA-ACGTTTTGCAGAAA 174 consensus_6051#1 TCGTTGGTTTTCTTCTATTTTACTGCAAGCACTTTCATAAGTTCGCACACTTTCGATAAG 133 ** ** **** * * * * * * ** ** **** ** *** * ** consensus_6051#0 CAGTATTACAGTTCCA-AGAGAAAGTCGAT--GATC--TTCTAGTTACCACTCGAGAAAT 229 consensus_6051#1 TGATATTGCATATGGATAGAGCTGATTGGTTTGATGAGCTCTATTAACTATTCCA-AGAG 192 **** ** * * **** * * * *** **** * ** * ** * * * consensus_6051#0 AGATAGGGAAGTCAAAGCATTAGAAACCTGTGTTTTTTCCAAGTCGGTTTTCGAGGAGAT 289 consensus_6051#1 GTACACGAAAGCCAAGCCATTTCATATTT-CGTACCTCCTTGGCAAGCGT---------- 241 * * * *** *** **** * * * ** * * * * * consensus_6051#0 TCTAGGTAAAATCCAGAAATCGGTGGACGAATTAAATCCGCACCAATATTCAAATCTTCC 349 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 CCAATGGGTTGCTCGTTTAGATGAAGAAGTTGAACATCGTCTGGTTGCACGCCTTGAGGC 409 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TAGTATTTCTGAATGGACACGTGTTTTATTAGGTCAGAAAGACCAGTTCGATGCAAATGA 469 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TTCGGATGATACTCATTCGACATCACAGTCCAAAAATCGTTTAGGTGGTGAACCGCAAAT 529 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 AAAGGCCCTTGTTCATGAACTTAGAATAACCAATCAACAGATTCATCTACATCCTAGTAT 589 consensus_6051#1 ------------------------------------------------------------ consensus_6051#0 TGAAGTAGCTCGA 602 consensus_6051#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||