These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6070#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 815 fasta sequence [AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCACCTGAAGATCCTATCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT-GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGAACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAGCAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA] [+] EMBL CD121256 [AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCACCTGAAGATCCTATCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCC ATAGTGTCTACTAATGGGAACGA TAACTGNTAAAGTGATCATAATTTT AACGAC ACCACC ] [-] EMBL CD121189 [ CGTTATGCATCAGCTGAAGCCGATGNCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTANAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTAATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAAATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTTCCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCAAAAATGAGAATGTTTCGCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCAT ] [+] EMBL CD063180 [ CATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTCAACGCCAATAGTGTCTACTAAT GAAACGATTAACTGTAAAAGTGATCATAATTTTAAACGACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGAACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAGCAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA] consensusID : consensus_6070#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GAATTCGGCACGAGGCCTGAAGATCCTATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAA] [+] EMBL CD077777 [GAATTCGGCACGAGGCCTGAAGATCCTATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTGAAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGAGAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAATTGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTAAAAAGGAAGTCGCATACATATCTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6070#0 AAACTAAATGAAGCTATCGAGCATTACACTATGGCCATACGACTTTCA-CCTGAAGATCC 59 consensus_6070#1 ----------------------------------GAATTCGGCACGAGGCCTGAAGATCC 26 ** ** * *********** consensus_6070#0 TATCCC-ATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTG 118 consensus_6070#1 TATCCCCATACATAAATCGTGCATTTGCTTATATTAAAACAGAACGTTATGCATCAGCTG 86 ****** ***************************************************** consensus_6070#0 AAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGA 178 consensus_6070#1 AAGCCGATTGCACAGCTGCTTTAAGACTAGACAGAACTTCTGTTAAAGCATTTTATCGGA 146 ************************************************************ consensus_6070#0 GAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTCAAAGGAAT 238 consensus_6070#1 GAGCACTTGCTCGAAAAGGTCTGGGTCATATTACTGGAGCAATTGAAGATTTAAAGGAAT 206 *************************************************** ******** consensus_6070#0 TGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTA 298 consensus_6070#1 TGCTTAGATTCGATCCAGATAACAAAACTGCCACAAATGAGCTCGAAGCTTTAGTCGGTA 266 ************************************************************ consensus_6070#0 AAAAGGAAGTCGCATACATATCTAAATCTCCCGTGTCTTGTAGTTCAATCCAGTCGGGTA 358 consensus_6070#1 AAAAGGAAGTCGCATACATATCTAA----------------------------------- 291 ************************* consensus_6070#0 ATCCAAGGAAAATGAGACGAATACCAATAATTGAAGTTGGTAGTGATAATCATAATAAAA 418 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 ATATACTGAGTACACCTGTACAGAATATTACAAAATCTGTTTGTACTGATGATGATAGTT 478 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 CCGTCTCAAATAACAGGTATTCTGTTTTGAATAAAGATGAATCANANATGAGAATGTTTC 538 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 GCATTCAACTCCAAAGATATCAGATAGTTTGGAATCTCGAAATATATCCTCCAGTACGTC 598 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 AACGCCAATAGTGTCTACTAATGAAACGATTAACTGTAAAAGTGATCATAATTTTAAACG 658 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 ACAACCACCATTGTTAAATATGACCTTACATAAACCACCATCAAATTGGTTTCAATTAGA 718 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 ACGTGAACTACGTGAATTATGTCAAAGAAATTCTTCATCCAACTACCGGCCAAATCTTAG 778 consensus_6070#1 ------------------------------------------------------------ consensus_6070#0 CAAAGAAGCAATCATTTATTTGTGTAATATTCAACCA 815 consensus_6070#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||