These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATATTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGATGACGGTTGACTATTAGAACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAACGGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGTACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGAAGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATGTTGGGGTGGAACAGAATCAA] [+] EMBL AI395115 [TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATATTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGATGACGGTTGACTATTAGAACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAACGGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGTACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGAAGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATGTTGGGGTGGAACAGAATCAA] consensusID : consensus_6071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 341 fasta sequence [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTCTGGTCCTT] [+] EMBL CD139454 [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTC ] [+] EMBL CD139412 [ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCATCTCATTACATGCCCGGATCCCAGACTGAACCAGTCGTCCCAAATCAACAAACTCTGTCATCTGTTGATAACGTCCATCCGTGCTCTACTATGTCGGTGTCCTCTGCAGATGTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCAATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTC ] [+] EMBL CD171533 [ AATATTTATTACCAAGGTTGTCCTGTACCACCATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTCTGTACCACCACAACATTACACGCCTCATCAACACAGTGGTCATTCTTGGTCTGGTTATTCTAATTCTGGTCCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6071#0 TTTTTTTTTTTTTTTTTTGACCATTTAGGACATATAATTTACACTACTAAAAACAAAATA 60 consensus_6071#1 --------------------ACAACAGGTGCCTCCAGACTATGTTCAGAGTCAACATCCA 40 ** * * * * ** * * * * * consensus_6071#0 TTAAGACAGATAATAGGACTTTAAAATTGACATAAAAACAGTCATTTGTCATTTGTAGAT 120 consensus_6071#1 TCTCATTACATGCCCGGATCCCAGACT-------GAACCAGTCGTCCCAAATCAACAAAC 93 * * ** *** * * * ** ***** * ** * * consensus_6071#0 GACGGTTGACTATTAG-AACCTCCAGAGGCACCAACGCTAGTTGAATTATCCCCAAGAAC 179 consensus_6071#1 T-CTGTCATCTGTTGATAACGTCCATCCGTGCTC-TACTATGTCGGTGTCCTCTGCAGAT 151 * ** ** ** *** **** * * *** * * * * * consensus_6071#0 GGTTGCCGCAGTTTGGTCCGGTTTTGCTGATATTTGGGAAATAGGATAAGAAGCACCCGT 239 consensus_6071#1 GTTGGCATGGGTCAAATGGTGTCTAACCAGTCTCAAGGAGCCA--ATATTTATTACCAAG 209 * * ** ** * ** * * * * *** * *** * *** consensus_6071#0 ACTGCATTGAGGCGACTGGTGTGCATGTTGCTGTGACTGTGGATAAGCTGGGACTTGTGA 299 consensus_6071#1 GTTGTCCTGTACCACC--ATATACCCATGGTAGTAATGTGGGGCCCAGTGGATTTTATTC 267 ** ** * * * * * * * ** * ** *** ** * consensus_6071#0 AGGACCAGAATTAGAATAACCAGACCATGAATGAGCACTGTGTTGATGAGGCGTGTCATG 359 consensus_6071#1 TGTACCACCACAACATTACACGCCTCATCAACACA-GTGGTCATTCTTGGTCTGGTTATT 326 * **** * * * ** * *** ** ** * * * * ** ** consensus_6071#0 TTGGGGTGGAACAGAATCAA 379 consensus_6071#1 CTAATTCTGGTCCTT----- 341 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||